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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggattttcttttctggttcgttcagtacatgcatgcaaatatatatcttaattgcattgattatattagttagtactattgtatttcattgaacgctgcatgcatgcatgcttggcatataataattaatcaagcaccggtgcggtaaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGGACGCCGACAAGGTGAACCTGTGGTTCGAGGTGCCTGGGCAGTCCAAGGA

Basic information

species Zea mays
transcript AC202185.4_FGT004
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211240300|gb|FL257370.1|FL257370
EST:     ATCACAACCCAAAGACGGATCTGCATCCATTTRASSATCCCTGCSSTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGRACGGTGGCAGCTGGAGGAG
genomic: ATCACAACCCAAAGACGGATCTGCATCCATTTAAC-ATCCCTGCC-TTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAG
EST: gi|211240291|gb|FL257361.1|FL257361
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240286|gb|FL257356.1|FL257356
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|149013416|gb|EE042941.2|EE042941
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240292|gb|FL257362.1|FL257362
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|60357660|gb|DN224633.1|DN224633
EST:     GACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235818|gb|FL257337.1|FL257337
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235812|gb|FL257331.1|FL257331
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238056|gb|FL257350.1|FL257350
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|148958120|gb|EC904318.2|EC904318
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|60350732|gb|DN217705.1|DN217705
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240293|gb|FL257363.1|FL257363
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240299|gb|FL257369.1|FL257369
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238050|gb|FL257344.1|FL257344
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|71422350|gb|DR805695.1|DR805695
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238052|gb|FL257346.1|FL257346
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235820|gb|FL257339.1|FL257339
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTGCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTT-CTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAG
EST: gi|211240290|gb|FL257360.1|FL257360
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238053|gb|FL257347.1|FL257347
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGWACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235816|gb|FL257335.1|FL257335
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACYACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235815|gb|FL257334.1|FL257334
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235819|gb|FL257338.1|FL257338
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240297|gb|FL257367.1|FL257367
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACC-GGTGGCACCACGTGAGGAA
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAA
EST: gi|211235814|gb|FL257333.1|FL257333
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238060|gb|FL257354.1|FL257354
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235817|gb|FL257336.1|FL257336
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235813|gb|FL257332.1|FL257332
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGG
EST: gi|211238051|gb|FL257345.1|FL257345
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238049|gb|FL257343.1|FL257343
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211235821|gb|FL257340.1|FL257340
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238054|gb|FL257348.1|FL257348
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238048|gb|FL257342.1|FL257342
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|60399696|gb|DN232506.1|DN232506
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238059|gb|FL257353.1|FL257353
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238047|gb|FL257341.1|FL257341
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240294|gb|FL257364.1|FL257364
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211238057|gb|FL257351.1|FL257351
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240298|gb|FL257368.1|FL257368
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG
EST: gi|211240289|gb|FL257359.1|FL257359
EST:     GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCG                         TTCTGGTGCACCCGGTGGCACCACGTGAGGAACGATGGCAGCTGGAGGAGG
genomic: GGATCACAACCCAAAGACGGATCTGCATCCATTTAACATCCCTGCCTTCGgtgaggattt ... aaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgcatgcttggcatataataattaatcaagcaccggtgcggtaaaataacagTTCTGGTGCACCCGGTGGCACCACGTGAGGAACGGTGGCAGCTGGAGGAGGACGCCGACAAGGTGAACCTGTGGTTCGAGGTGCCTGGGCAGTCCAAGGA
                      aattaat  putative branch site (score: 3)
               atataataattaatca  TA-rich tract