1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgccatttccccgcggcgcggcgcggcgcggcggctcatccgatcgccagtgtttggcactgattgaattctcgttgttgggcgcgcag
species | Zea mays |
transcript | AC194341.4_FGT003 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG GTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGAEST: gi|211251145|gb|FL466744.1|FL466744
genomic: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgcca ... gggcgcgcagGTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGA
EST: CGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG GTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGAEST: gi|211251144|gb|FL466743.1|FL466743
genomic: CGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgcca ... gggcgcgcagGTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGA
EST: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG GTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGAEST: gi|211251146|gb|FL466745.1|FL466745
genomic: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgcca ... gggcgcgcagGTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGA
EST: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG GTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGAEST: gi|71317282|gb|DR795325.1|DR795325
genomic: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgcca ... gggcgcgcagGTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGA
EST: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG GTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGA
genomic: ACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgcca ... gggcgcgcagGTGGAGCGTCGAGGAGATGCGGGGCGTGCAGGAGACGCTGCAGAACAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAGgcaagtgccatttccccgcggcgcggcgcggcgcggcggctcatccgatcgccagtgtttggcactgattgaattctcgttgttgggcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG