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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttgtgttggtctgttcttgcacaagcaaacaatggaagagtaggtgtgcatgtaacaccactttatggaactcgaaacagATTCCTCCAAAGCATACAATGATTACCCCGTCTCAGTGCAAGTCACTGTGGAAACAATTTAAAGCAGAAACTGAGTTCACGATTACAAGCAGTATCCACA

Basic information

species Zea mays
transcript AC193355.3_FGT005
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC193355.3_FGT005 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 3'ss of exon 18
gtaactttgtgttggtctgttcttgcacaagcaaacaatggaagagtaggtgtgcatgtaac-accact-ttatggaactcg-aaacagATTCCTCCAAAGCATACAATGATTACCCCGTCTCAGTGCAAGTCACTGTGGAAACAATTTAAAGCAGAAACTGAGTTCACGATTAC--AAGCAGTATCCACA
||||  |||||||  | | |||  ||    | ||| | | |||| | |    | |||| ||| | |||  |||| ||||||   | ||| || |||||||| ||||  | || || || ||||| ||||||||||||||||| || || |||||||||||||||||| | |||||  |||| || ||||  
gtaagcttgtgttaattt-ttcgcgctgctgtaaatattagaagtgcataaat-catggaaccatcacgattattgaactcttgagcagGTTTCTCCAAAGTATACCCTCATCACTCCTTCTCAATGCAAGTCACTGTGGAAGCAGTTCAAAGCAGAAACTGAGTTCGCCATTACACAAGCGGTTTCCA--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacaatggaagagtaggtgtgcatgtaacaccactttatggaactcgaaacagATTCCTCCAAAGCATACAATGATTACCCCGTCTCAGTGCAAGTCACTGTGGAAACAATTTAAAGCAGAAACTGAGTTCACGATTACAAGCAGTATCCACA
                        atgtaac  putative branch site (score: 3)
                                  actttat  TA-rich tract