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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCACCGGCTTCGAGGGCAAGGACAAGGTCCGCGCCGTCCTGCCGGAGCCGTTCCGCGGCCTCGTCGTCGACAGGTCCGGCATGATGCCGCTGTACCGgtacgtacgtagatcatgcatggtcatggagtgctactgctactgctactgatgatctgctagctatagctagctagctagttcgtcttataataataattacttgtaattaatcgcatcgcactgcatttgcag

Basic information

species Zea mays
transcript AC191071.3_FGT001
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC191071.3_FGT001 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g08410.1 (Oryza sativa), 5'ss of exon 4
TCGCCACCGGCTTCGAGGGCAAGGACAAGGTCCGCGCCGTCCTGCCGGAGCCGTTCCGCGGCCTCGTCGTCGACAGGTCCGGCATGATGCCGCTGTACCGgtacgtacgtagatcatgcatggtcatggagtgctactgctactgc-tactgatgatctgctagctatagctagctagctagttcgtcttataataataattacttgtaattaatcgcatcgcactgcatttgcag
||||||||||||||||||||||||||||| ||||| ||||||| || ||||| |||||||||||||||||| |||  |||  ||||||||| || |||||||||  || |          |   ||   | |   || ||    ||  ||  |  ||  ||||   || | |   |   |  ||  | |     ||                                        
TCGCCACCGGCTTCGAGGGCAAGGACAAGCTCCGCTCCGTCCTCCCCGAGCCCTTCCGCGGCCTCGTCGTCAACAAATCCTCCATGATGCCCCTCTACCGgtacccacatgt--------taaccaaccaattacaccgcagacgcacacgcacaattagcta---atggatgagtgttttttttttgtgtgtgtag---------------------------------------