1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgttgacttgtggctgctgttttgtttgggaatccatattacgcccaccaaagcatcgtttgatcgtttatttagtcatttccattaccattttttcagGGTGTATTTGATACAGCTGTCGAAGAAGACAATCTGGAGTACAATGAGAACGGAAGATGGCCTTTTCAACAATTTGTGGATCAACTTATTCATGATATGT
species | Zea mays |
transcript | AC190743.3_FGT005 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ccaccaaagcatcgtttgatcgtttatttagtcatttccattaccattttttcagGGTGTATTTGATACAGCTGTCGAAGAAGACAATCTGGAGTACAATGAGAACGGAAGATGGCCTTTTCAACAATTTGTGGATCAACTTATTCATGATATGT
gtttgat putative branch site (score: 51)
ccattttttc putative PPT
tttatttagtcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttgacttgtggctgctgttttgtttgggaatccatattacgcccaccaaagcatcgtttgatcgtttatttagtcatttccattaccattttttcagGGTGTATTTGATACAGCTGTCGAAGAAGACAATCTGGAGTACAATGAGAACGGAAGATGGCCTTTTCAACAATTTGTGGATCAACTTATTCATGATATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
atgttga
- - - - - - -gctgctg
- - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - -ccaccaa