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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctgcgaagtcatcactgtctgtaagcacatgaggtagcagaggttccacatgaatcaccgaaagatttggacaggagtccagtgtgcgagacCTTGGGGGGTTGATGCGCTGGTTGAAGTTCTCGTACTCCGGATCAAAGTAGGGCAGCATCTTCGGACGGAGCCCGTGCGCGGATCCTTCCA

Basic information

species Zea mays
transcript AC190704.3_FGT001
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149110033|gb|EE293847.2|EE293847
EST:     CAAGGTGCAGTCGCTGCATGTGGTGTTGTCGATGCAAACC                         CTTGGGGGGTTGATGCGCTGGTTGAAGTTCTCGTACTCCGGATCAAAGTAG
genomic: CAAGGTGCAGTCGCTGCATGTGGTGTTGTCGATGCAAACCctgcgaagtc ... tgtgcgagacCTTGGGGGGTTGATGCGCTGGTTGAAGTTCTCGTACTCCGGATCAAAGTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagaggttccacatgaatcaccgaaagatttggacaggagtccagtgtgcgagacCTTGGGGGGTTGATGCGCTGGTTGAAGTTCTCGTACTCCGGATCAAAGTAGGGCAGCATCTTCGGACGGAGCCCGTGCGCGGATCCTTCCA
                       aaagattt  TA-rich tract