1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaatgtatttcagtctcctagtactatgttgtcataaagaatgttacattttgctgtttatctgtttgaatccatgtacttgactcttctgttcaacagATGAGGTTGATTGCTAACCTTGATTATACTTTATAA
species | Zea mays |
transcript | AC187082.3_FGT002 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tacattttgctgtttatctgtttgaatccatgtacttgactcttctgttcaacagATGAGGTTGATTGCTAACCTTGATTATACTTTATAA
acttgac putative branch site (score: 4)
ctcttctgttc CT-rich tract
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatgtatttcagtctcctagtactatgttgtcataaagaatgttacattttgctgtttatctgtttgaatccatgtacttgactcttctgttcaacagATGAGGTTGATTGCTAACCTTGATTATACTTTATAA
- - tgtattt
- - - - - - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - aaagaatg
- - - - - - - - - - - - - - - - - - - - - - -tacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atccatg