1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaacagacacatgattattggaaagcagtttaactccatgcgacatggaaagccctgtatcctattcctgatggtgtgtgtgtgtgtaattctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGACAGGTTGGAAGACGCTTGGCTTCAGTTTGCGGTGGAGCACTCCTGCGA
species | Zea mays |
transcript | AC148152.3_FGT008 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAG AAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGEST: gi|211331627|gb|FL134113.1|FL134113
genomic: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAGgtccccttct ... tctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGG
EST: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAG AAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGEST: gi|18180433|gb|BM381643.1|BM381643
genomic: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAGgtccccttct ... tctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGG
EST: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAG AAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGEST: gi|148945507|gb|EC890751.2|EC890751
genomic: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAGgtccccttct ... tctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGG
EST: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAG AAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGEST: gi|148959131|gb|EE010603.2|EE010603
genomic: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAGgtccccttct ... tctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGG
EST: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAG AAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGG
genomic: CGTCGCCGACTTCCGCGCCCTCCGCCCCGCCTCGGCCGAGGACGCCGCAGgtccccttct ... tctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGG
tggaaagccctgtatcctattcctgatggtgtgtgtgtgtgtaattctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGACAGGTTGGAAGACGCTTGGCTTCAGTTTGCGGTGGAGCACTCCTGCGA
tcctgat putative branch site (score: 14)
ttcttt putative PPT
taattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacagacacatgattattggaaagcagtttaactccatgcgacatggaaagccctgtatcctattcctgatggtgtgtgtgtgtgtaattctttagcagAAGATGACAGCTTCTTCTTTGGGCTAGCGACCGCGCCGGCACATGTGGAGGACAGGTTGGAAGACGCTTGGCTTCAGTTTGCGGTGGAGCACTCCTGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
gaacaga
- - - - -catgatt
- - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ccctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtg