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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaacaaactgttctctatctcatagaatttgttttcttcaatttcttgtgcttccttccaactaatcttgttttgttgtcatcctttttcag

Basic information

species Vitis vinifera
transcript Vv19s0085g01100.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g48790.3 (Oryza sativa), 5'ss of exon 4
GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgca--caacaaactg----ttctctatctcatagaatttgttttctt----caatttcttgtgcttccttccaactaatcttgttttgttgtcatcctttttcag
 |||||||| || || ||||| || || ||||| || || || |||||||| ||||||||||| ||||| |||||||| || ||||| || ||||| |||||    |  |||  | ||     || | ||| |  |   | |  |  |||     ||  | ||||| | |  |    |  ||| |    |   |||| |||        
ATGGCACATTATCAAGGATGTGCCTAATCCACAATTTCGCCACATAATACTGGAGAACAACGAAAACAAACCTGTGACAAACAGCAGGGATACACAAGAGgtatttattcaattacctagagattttttatttttttatactcatgatctcaagccatctgcttgtacgtagtattcataaatttcccatc-ctgtcttcc--------

upper sequence: Vv19s0085g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G17240.2 (Glycine max), 5'ss of exon 7
GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgca-caacaaactgttctctatctcatagaatttgttttcttcaatttcttgtgcttccttccaactaatcttgt-tttgttgtcatcctttttcag
 |||||||| ||||| ||||||||||| || ||  | || || |||||||| ||||| || ||  |||||||||| || ||||| ||||||||||| |||||  ||| | | |       |   |    |  ||    || ||  |   |||||| ||  | |||   ||| ||| ||| |||||||   |||  ||||||
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGCCACATAATACTCGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGgtatgcatccatagtaaaagcaacaatctactgacgaagtcttggttg-tttcttctgtatgctt---actcatcatgtctttgttgat-tccactttcag

upper sequence: Vv19s0085g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G41960.1 (Glycine max), 5'ss of exon 7
GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaacaaactgtt--ctctatctcatagaatttgttttcttcaatttcttgtgc-ttccttccaactaatcttgttttgttgtcatcctttttcag
 |||||||| ||||| ||||||||||| || ||  | |||||||||||||| ||||| || ||  |||||||||| || |  || ||||||||||| |||||  |||      | |     |   |    |  ||    || ||  |   |||||| ||  | | || | | |     ||| || |     || ||||||||
ATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCATATAATACTCGAGAATAATGATCACAAGCCTGTTACAAGCAGTAGAGACACACAAGAGgtttgcattttctagtaaaaacagaaatctactgagaaagtcttagttg-tttcttctgtatgctttactaatgtctatgtcttctatgtttcttttttcag

upper sequence: Vv19s0085g01100.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G79270.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGCACATCATAAAAGATGTTCCAAACCCACAGTTGCGGCATATAATACTTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaacaaactgttctctatctcatagaatttgttttcttcaatttcttgtgcttccttccaactaatcttgttttgttgtcatcctttttcag---
|||||||||||| |||||||||||||| || ||  | || ||||| ||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||    |||  |     ||      || |  ||| |   |     || | ||  | |||    || | || ||  |||||     |  |||||  |      
GTGGCACATCATCAAAGATGTTCCAAATCCGCAACTACGACATATCATACTAGAGAACAATGAGAACAAGCCTGTAACCAATAGCAGAGACACACAAGAGgta---acattagttccttaataggcttaaggaagtgaat-----cattatcaagagctaatctc-atctcatactgtttaaacattgtccttcatatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362572|gb|EC926115.1|EC926115
EST:     TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAG                         GTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
genomic: TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaa ... cctttttcagGTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
EST: gi|110361109|gb|EC924562.1|EC924562
EST:     TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAG                         GTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
genomic: TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaa ... cctttttcagGTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
EST: gi|110358581|gb|EC922894.1|EC922894
EST:     TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAG                         GTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
genomic: TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaa ... cctttttcagGTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
EST: gi|30306091|gb|CB982885.1|CB982885
EST:     TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAG                         GTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
genomic: TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaa ... cctttttcagGTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
EST: gi|110428821|gb|EC995302.1|EC995302
EST:     TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAG                         GTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG
genomic: TTGAGAACAACGACAACAAGCCTGTGACCAATAGCAGAGACACACAGGAGgtgcgcacaa ... cctttttcagGTGAGATTTCCTCAGGGGATCGAAATCTTGAACATTTTTAAGAACTATGTG