1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTCATCACCTGCTATACCCTATAACAGTGGAGGTGCTGCATCAAGTGTTTTCTCCTCATGGTTTTGTGGAGAAGATTGTCACGTTTCAGAAGTCAGCTGgtcagcttcttcaagttttctctctttatctctcttgtgctgtctctctatctcttaattcttaattctcctttcaactcttgaggactagctggatggt...
species | Vitis vinifera |
transcript | Vv18s0072g00310.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTCCTCATGGTTTTGTGGAGAAGATTGTCACGTTTCAGAAGTCAGCTG GTTTTCAAGCCCTTATCCAGTATCAATCACGCCAGAGTGCAGTTGCAGCAAEST: gi|351014018|gb|FQ434170.1|FQ434170
genomic: TTCTCCTCATGGTTTTGTGGAGAAGATTGTCACGTTTCAGAAGTCAGCTGgtcagcttct ... aactttgtagGTTTTCAAGCCCTTATCCAGTATCAATCACGCCAGAGTGCAGTTGCAGCAA
EST: GAAGTCAGCTG GTTTTCAAGCCCTTATCCAGTATCAATCACGCCAGAGTGCAGTTGCAGCAA
genomic: GAAGTCAGCTGgtcagcttct ... aactttgtagGTTTTCAAGCCCTTATCCAGTATCAATCACGCCAGAGTGCAGTTGCAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCATCACCTGCTATACCCTATAACAGTGGAGGTGCTGCATCAAGTGTTTTCTCCTCATGGTTTTGTGGAGAAGATTGTCACGTTTCAGAAGTCAGCTGgtcagcttcttcaagttttctctctttatctctcttgtgctgtctctctatctcttaattcttaattctcctttcaactcttgaggactagctggatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc