Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110380344|gb|EC945602.1|EC945602EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
EST:
gi|110380420|gb|EC945684.1|EC945684EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
EST:
gi|37189498|gb|CF608847.1|CF608847EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
EST:
gi|37189484|gb|CF608833.1|CF608833EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
EST:
gi|110371679|gb|EC935799.1|EC935799EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
EST:
gi|37189506|gb|CF608855.1|CF608855EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
EST:
gi|30130580|gb|CB915919.1|CB915919EST: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAG GATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
genomic: CACAAAACCCTATGTCGCAGGCCCAGTTCCTGTCCTGGAAACGCCAGAAGgtgctttttc ... ttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cggaattcctacttaacccaaggacagtgatcattttttatttttttttttgcagGATGCTGATGTGTCAGCTAGAAGAGACGAAGCAGCTAGGAAACGTGTGGAGGACATAGCAGCAGGGGCAGTGCAAATGAATGGCCGAGAGCTTTTCTTGC
acttaac putative branch site (score: 3)
tcattttttatttttt putative PPT
acagtgatcatttttt TA-rich tract