Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATCGACAATCTCAGAAAGgtatagcctatcgcctaagtttctattattgtcacgtttcaatctagaaattcatattctgattttaatcgattttgttggcgttgaacttgattgtgtt...

Basic information

species Vitis vinifera
transcript Vv18s0001g04160.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110722631|gb|EE099029.1|EE099029
EST:     ATCGACAATCTCAGAAAG                         GAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
genomic: ATCGACAATCTCAGAAAGgtatagccta ... ttcctttcagGAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
EST: gi|110688522|gb|EE067170.1|EE067170
EST:     ATCGACAATCTCAGAAAG                         GAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
genomic: ATCGACAATCTCAGAAAGgtatagccta ... ttcctttcagGAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
EST: gi|110724358|gb|EE100126.1|EE100126
EST:     ATCGACAATCTCAGAAAG                         GAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
genomic: ATCGACAATCTCAGAAAGgtatagccta ... ttcctttcagGAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
EST: gi|110723013|gb|EE099843.1|EE099843
EST:     GTTCATCGACAATCTCAGAAAG                         GAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
genomic: GTTCATCGACAATCTCAGAAAGgtatagccta ... ttcctttcagGAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
EST: gi|110724588|gb|EE100545.1|EE100545
EST:     TTCATCGACAATCTCAGAAAG                         GAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG
genomic: TTCATCGACAATCTCAGAAAGgtatagccta ... ttcctttcagGAAGTTTGCAGTGTAATCTGCTATATCTGCAGTTTGTCAAAGTGGAGGGTG