Sequence
atgc intronic sequence ATGC exonic sequence...cccaaattatcaaattaacttgatattcattgttcacccatttcagaattcgaaatacctgtcaaaaagctgctacttaatgcattctcccttcttgtagGACATGTTTGCTGCTGGAAGTGACACTACATACACAGTCTTGGAGTGGGCAATGACAGAGCTCTTGAGGCACCCACAAGTCATGAGGCAACTTCAGAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09570.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G31380.1 (Glycine max), 3'ss of exon 1
cccaaattatcaaattaacttgatattcattgttcacccatttcagaattcgaaatacctgtcaaaaagctgctacttaatgcattctcccttcttgtagGACATGTTTGCTGCTGGAAGTGACACTACATACACAGTCTTGGAGTGGGCAATGACAGAGCTCTTGAGGCACCCACAAGTCATGAGGCAACTTCAGAATG
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ctcatgtgaaagtgtgatactattgaaattgaaacatttattgttaaatcagtgatgtttggtaactataaggtgtcctgtaattatgttttcttttcagGACATGTTTGTTGCGGGTACTGACACAACACACACGGCCTTGGAGTGGACAATGTCAGAGCTGTTAAAGCACCCAATGGTTATGCATAAATTGCAAGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30133508|gb|CB918847.1|CB918847EST: ATGTCACAGGCGTTGCCATAACTGGAGTTTGCATCAAAGCTCTTACTCTG GACATGTTTGCTGCTGGAAGTGACACTACATACACAGTCTTGGAGTGGGCA
genomic: ATGTCACAGGCGTTGCCATAACTGGAGTTTGCATCAAAGCTCTTACTCTGgtaaggatga ... cttcttgtagGACATGTTTGCTGCTGGAAGTGACACTACATACACAGTCTTGGAGTGGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaattcgaaatacctgtcaaaaagctgctacttaatgcattctcccttcttgtagGACATGTTTGCTGCTGGAAGTGACACTACATACACAGTCTTGGAGTGGGCAATGACAGAGCTCTTGAGGCACCCACAAGTCATGAGGCAACTTCAGAATG
acttaat putative branch site (score: 4)
tgcattctcccttctt CT-rich tract
tacttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccaaattatcaaattaacttgatattcattgttcacccatttcagaattcgaaatacctgtcaaaaagctgctacttaatgcattctcccttcttgtagGACATGTTTGCTGCTGGAAGTGACACTACATACACAGTCTTGGAGTGGGCAATGACAGAGCTCTTGAGGCACCCACAAGTCATGAGGCAACTTCAGAATG
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cccaaat
- - - - - -aaattaa
- - - - - - - - - - - - - - - - -tcaccca
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagc
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