1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgttttttgtttttattctggcttctgcaatttaacatctgattgttggtgcattacttaggacctggttttaactgttcattcactttgtcaccaacagGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAGCATCCTAACTGGAATATGGGGAAAAAGATCACGGTTGACTCAGCTACC
species | Vitis vinifera |
transcript | Vv17s0000g08390.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAG GGATTGGCCTGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAEST: gi|110392719|gb|EC957016.1|EC957016
genomic: GAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAGgtgtggaatc ... tcaccaacagGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAA
EST: GAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAG GGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAEST: gi|110390668|gb|EC955591.1|EC955591
genomic: GAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAGgtgtggaatc ... tcaccaacagGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAA
EST: GAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAG GGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAA
genomic: GAGGGAGCACTTCGGCGCATTCTTTTAACTGCATCTGGAGGGGCATTCAGgtgtggaatc ... tcaccaacagGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAA
ttggtgcattacttaggacctggttttaactgttcattcactttgtcaccaacagGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAGCATCCTAACTGGAATATGGGGAAAAAGATCACGGTTGACTCAGCTACC
ttttaac putative branch site (score: 2)
ctttgtc putative PPT
attactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttttgtttttattctggcttctgcaatttaacatctgattgttggtgcattacttaggacctggttttaactgttcattcactttgtcaccaacagGGATTGGCCCGTTGATAAATTGAAAGAAGCTAAAGTTTCAGATGCTTTGAAGCATCCTAACTGGAATATGGGGAAAAAGATCACGGTTGACTCAGCTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - attctgg
- - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctggtt