Sequence
atgc intronic sequence ATGC exonic sequencegtaattattagtatgcctttccagatttcttttgaatatatttaagtgtttcagaagtcatcactgcttgagatagtttttgtggtttatttctttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G082613_T01 (Zea mays), 3'ss of exon 5
gtaattattagtatgcctttccagatttcttttgaatatatttaagtgtttcagaagtcatcactgcttgagatagtttttgtggtttatttctttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
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----------------------------gtatgcgatatttgaatttgtattacaagac----ctgttttagcaaattatctagagct--ttcttttgcagCGGAGTACTGCATCCCATTGGTTCGCATTGGTGGTTTGTTTATAGCTGCAAAAGGACATGATCCCCAT
upper sequence: Vv17s0000g07700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G10090.1 (Glycine max), 3'ss of exon 4
gtaattattagtatgcctttccagatttcttttgaatatatttaagtgtttcagaagtcatcactgcttgagatagtttttgtggtttatttctttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
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gtaa--attgacga---tttcctgatttaattcttctttgctttgacacttcgtgatttgctactgctt----tagtgtttgcttcttgtcacatttccagCTGAATATTGTCTTCCTTTGGTTCGTGTTGGTGGGTTGTTTATTGCTGCCAAGGGTCATGATCCTGAG
upper sequence: Vv17s0000g07700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G01800.1 (Glycine max), 3'ss of exon 4
gtaattattagtatgcctttccagatttcttttgaatatatttaagtgtttcagaagtcatcactgcttgagatagtttttgtggtttatttctttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
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gtaaattgaggagttcctgatttaattctttat-----tgctttgacacttcgtgatttgctatggctt----tagtgtttgtt-cttgttgcatttccagCTGAATATTGTCTTCCTTTGGTTCGTGTCGGTGGGTTGTTTATTGCTGCCAAGGGTCATGATCCTGAG
upper sequence: Vv17s0000g07700.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G50110.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaattattagtatgcctttccagatttcttttgaatatatttaagtgtttcagaagtcatcactgcttgagatag-tttttgtggtttatttc--tttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
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gta-ttatttacaag--tttcaagtagggtagtgcaagaaacaaagttgcttattagttag---tgttcaaagtggatctgagttgtttgttatgaattttcagCTGAATATTGTCTTCCTCTGGTTCGGATTGGTGGATTGTTTGTAGCTGCTAAGGGTCATGACCCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttcagaagtcatcactgcttgagatagtttttgtggtttatttctttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
tttatttctttttc CT-rich tract
tttatttctttttca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattattagtatgcctttccagatttcttttgaatatatttaagtgtttcagaagtcatcactgcttgagatagtttttgtggtttatttctttttcagCTGAGTACTGTCTTCCTCTAGTTCGTGTGGGTGGTTTGTTTCTAGCTGCGAAAGGTCATGATCCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC