Sequence
atgc intronic sequence ATGC exonic sequence...taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatttgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 8
-taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatttgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA
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gtaccaatatataattttatctatatagtgcaatattcttgcaaggaatagtatac-----------cttttgatatacaattttg-------ttgt-tagGAGCCCTTGTTGAATGGAGTTGCACCTGGTGCACAAATAATATCTTGTAAAATTGGGGATTCTCGCTTAGGTTCAATGGAAACAGGAACTGGTTTGATTC
upper sequence: Vv16s0050g00510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 8
taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatttgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA
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-----gtactgatatataattttatctatacagtgcaacattcttgcgagga------atagtataccttttgaca------tacaatattgttgt-tagGAGCCCTTGTTGAATGGAGTTGCACCTGGCGCACAAATAATATCTTGTAAAATTGGGGATTCTCGCTTAGGTTCAATGGAAACAGGAACGGGTTTGATTC
upper sequence: Vv16s0050g00510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 8
taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatt-tgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA
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-----------------------gtagggatatagttttatccatagaatgcaattcctatgaaaagcattatacattataatatacattattgttggtagGAACCTTTGTTGAATGGAGTTGCTCCTGGAGCACAATTAATATCTTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaattattctctattttgtacttttaaaaactatttttaaaaatatttgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA
tctattttgtactttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaattatttatttttatttttgtttaaaaatagttgttttcagaaaattattctctattttgtacttttaaaaactatttttaaaaatatttgtacagGAGCCATTGTTGAATAGAGTTGCAGCTGGAGCACAGATGATATCTTGTAAAATTGGAGACTCACGCCTAGGTTCAATGGAAACAGGAACAGGCTTGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-aaaatta
- - - - - - - - - - - - - taaaaat
- - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - cagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaac