Sequence
atgc intronic sequence ATGC exonic sequenceCAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggcatgaattgtctttagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g03460.1 (Oryza sativa), 5'ss of exon 2
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggcatgaat-tgtctttagt
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CAGCTGACTAGTTCAGTTTTTGGTCTCTTTTATTGTGGCTATCTTCCTTCTTTCTGGGTTAAGCTCCGATCTGGACTAGCTGCTCCTGCCTTAAATACAAgtatgttgttcaatcaagtttgttttgtcctttcttagttggggtgccttcgttttattaattccttttctgtctagtttgttagcaaatgtagaaatgg-
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G053711_T05 (Zea mays), 5'ss of exon 2
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttc-tataaat-ttgaatattcaaagc--aacctacatctg-agcaaattttatc---taggcatgaattgtctttagt
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CAGCTAACTAGTTCAGTTTTCGGGTTATTTTACTGCGGTTATCTACCTTCTTTCTGGGTTAAGCTTCGATCCGGACTAGCTGCCCCTGCCTTAAATACAAgtatg------ttgcttagttggatcatcttgatacaagtactgtgtgttgaagggcgggcctggtgcagcggtagagcctaccgtttgtaactggaaggtcccgg--
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G027043_T01 (Zea mays), 5'ss of exon 2
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaag--tgctt---ctttttttctcttatcttctataaatttgaatattcaaa--gcaacc-tacatctgagcaaattttatctaggcatgaattgtctttagt----------------------------------------------------------------------------
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CAGCTAACTAGTTCAGTTTTTGGGTTGTTTTACTGTGGCTATCTACCTTCTTTCTGGGTTAAGCTCCGGTCAGGATTAGCTGCCCCTGCCTTAAATACAAgtaagttgcttggttggatcgtctttttttgctcttgtgctaatgtgc-tgtttaatttgctactgttgatatagataatgtgtgtattaa-atggattggccttacaaggtcatgtcattctagtgctttctatttctttgctacctgtaggaccctccctgatatacagtgtgttttgccag
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G30030.2 (Glycine max), 5'ss of exon 4
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggca-tgaattgtctttagt
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CAGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTCTGGGTTAAACTTCGATGTAGTTTAGCAGCTCCAGCCTTGAATACAAgtaattgactttattaattcctctttcaattttggttctgccggttgtggggctgggaagggtcacatctatttcttcataattaataaaatagctaaag-
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G06190.1 (Glycine max), 5'ss of exon 3
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctt--tttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggca-tgaattgtctttagt
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-AGCTAAGTAGTGCCATATTTGGGTTATTTTATTGTGGATATCTTCCCTCTTTTTGGCTTAAACTTCGATGTGGTTTAGCAGCTCCAGCCTTGAACACAAGtaattgactttttttaattcctctttcaattttggttctgctgattgtgtggctgaaaagg-gtcagatctatttcttcataattaataaaatcaccaaag-
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G45150.2 (Arabidopsis thaliana), 5'ss of exon 3
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagt-gcttctttttttctcttatct-tctataaatttgaatattcaaagcaa--cctacatctgagcaaatttta--tctaggcatgaattgtctttagt----------------
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CAGCTGAGTAGTACAATGTTTGGTCTGTTTTACTGTGGTTATCTCCCTTCTTTCTGGGTTAAGCTTCGCTGTGGTTTAGCTGCTCCTGCGCTTAACACTGgcaagctctcgccttttctcctcttttatatctctaaagttcagattattgaggccaagctctctgctttgtcctacttcagatgtccttttgaccagttttttttcctattgtttctatag
upper sequence: Vv15s0048g00240.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G60620.1 (Arabidopsis thaliana), 5'ss of exon 3
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggcatgaattgtctttagt
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CAGCTGAGTAGTACGATGTTTGGCCTGTTTTACTGTGGATATCTTCCTTGTTTCTGGGTTAAGCTACGTTGTGGTCTTACTGCTCCAGTTCTAAACACCGgcaagca------ctcccttattattatctttcctagctttga-tccgtaaagtaatcaaagcc-----aagtctcctgagcagtttaattacttatag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699872|gb|EE077264.1|EE077264EST: TTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCA GAATAGGAACAGCTTGGCCTTTTCTTCTTGGTGGTCAAGCTCATTGGACAG
genomic: TTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtg ... tttttggtagGAATAGGAACGGCTTGGCCTTTTCTTCTTGGTGGTCAAGCTCATTGGACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCTTAGTAGTGCCATGTTTGGGCTATTTTATTGTGGTTATCTTCCTTGTTTCTGGGTTAAGCTTCGATGTGGTTTAGCAGCTCCTGCCTTAAACACCAgtaagaagtgcttctttttttctcttatcttctataaatttgaatattcaaagcaacctacatctgagcaaattttatctaggcatgaattgtctttagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcaaa