1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAATTTGGGGGCTGAGAAGCCTGTAGGGGAAGAAGATGTGGCAGATGGCAACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggctccatgatttagatgtttttatcctgccaaagttggcatctcatcctataatcatattcatgactcttgatccacagcaaaagcaaggttt...
species | Vitis vinifera |
transcript | Vv15s0021g01420.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|110730185|gb|EE106973.1|EE106973
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|110685474|gb|EE062226.1|EE062226
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAAGGAGAATCCTGTGAATGAACTTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|28969693|gb|CB348726.1|CB348726
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|30327847|gb|CD011109.1|CD011109
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: GAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|71874798|gb|DT023853.1|DT023853
genomic: GAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|352773015|gb|FQ470630.1|FQ470630
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAGGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|29782926|gb|CB348647.2|CB348647
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|32269416|gb|CD718575.1|CD718575
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: GAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCTEST: gi|110703187|gb|EE079813.1|EE079813
genomic: GAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
EST: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAG GAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
genomic: ACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggct ... ttgtaaatagGAGATGACACTTGAGGAGTATGAGAAGGTGCTGGAAGAAAGGAGGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTTGGGGGCTGAGAAGCCTGTAGGGGAAGAAGATGTGGCAGATGGCAACAAGGAGAATCCTGTGAATGAACCTGAAGAAAAGGAACCTGAGGAAAAGgtgaatggctccatgatttagatgtttttatcctgccaaagttggcatctcatcctataatcatattcatgactcttgatccacagcaaaagcaaggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa