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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTTCTTGGCAGTGGCAATATCATTGATTTTGGTGGACTTTTTTGGACTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttgaactgcttattattattattattattttccaatcacaatcattttcatattacaagtactgtctatgtgtgtgtgcgcgcgcatgcgcatgcgtgcatgtgctaggctgcttgaattttcagactaatctttgcattttgtattgttag

Basic information

species Vitis vinifera
transcript Vv15s0021g00430.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g00430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g34390.1 (Oryza sativa), 5'ss of exon 2
ATTTGTTCTTGGCAGTGGCAATATCATTGATTTTGGTGGACTTTTTTGGACTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttgaactgcttattattattattattattttccaatcacaatcattttcatattacaagtactgtctatgtgtgtgtgcgcgcgcatgcgcatgcgtgcatgtgctaggctgcttgaattttcagactaatctttgcattttgtattgttag
 | ||| || || |||||||| ||  | ||  | | |||||||| ||| || || |||||||||||||||||||||||||| || ||  |  | || ||||| | |  |    || || |    |   ||||   |    |      |  |     |||||   |||    |  ||    |    |       | | | | | |                                                       
TTATGTGCTCGGAAGTGGCAACATGGTAGACATAGCTGGACTTTGTTGCACCTGCGCTGGTACCATGATGGTTGCAGCATCTGCAAATACTCTCAACCAGgtatgtgct----tgtttttcgaaagctttatccatcagtatgttgtactaaaccaatatttagagtgaattgcatagtaggccacctatttttac-cttacttt------------------------------------------------------

upper sequence: Vv15s0021g00430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G162776_T03 (Zea mays), 5'ss of exon 2
ATTTGTTCTTGGCAGTGGCAATATCATTGATTTTGGTGGACTTTTTTGGACTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttgaactgcttattattattattattattttccaatcacaatcattttcatattacaagtactgtctatgtgtgtgtgcgcgcgcatgcgcatgcgtgcatgtgctaggctgcttgaattttcagactaatctttgcattttgtattgttag
 | ||| ||||| |||||||| ||| | ||| ||| |||||||| ||| || ||||||||||| ||||||||||||||||| || ||  || | || |||||     ||  | | ||| ||   ||  | | |            ||||     |  || || ||    ||  |     | | ||      ||||  | ||| | ||  | ||    |                                         
TTATGTGCTTGGTAGTGGCAACATCGTGGATATTGCTGGACTTTGTTGCACATGTGCTGGTACAATGATGGTTGCAGCATCTGCAAATACCCTCAACCAGgtacacatttca-tactttttgacatgctaaat------------caatatacgttgtactaaaa----tgcatgcaaatctttggttcttcatgatcctgcat-caaatactgattt-----------------------------------------

upper sequence: Vv15s0021g00430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G38710.1 (Glycine max), 5'ss of exon 2
ATTTGTTCTTGGCAGTGGCAATATCATTGATTTTGGTGGACTTTTTTGGACTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttgaactgcttattattattattattattttccaatcacaatcatttt-catattacaagtactgtctatgtgtgtgtgcgcgcgcatgcgcatgcgtgcatgtgctaggctgcttgaattttcagactaatctttgcattttgtattgttag
 |||||  | || ||||| | |    ||||| ||   | ||||| ||| |||||    ||||||||||||||||| ||||| |||||||| || |||||||||  || |  |  | || || ||| |  |||  || || | |   | |||||||   |  |     || |   | ||| | |  | | |  |||     | |||                                                       
GTTTGTCTTGGGGAGTGGTAGTGCTGTTGATCTTTCGGCACTTTCTTGCACTTGCTTGGGTACCATGATGGTTGCTGCATCTGCTAACTCTTTGAATCAGgttggttcttgaaagatt-ttcttact-ctatacttgtctattgtgattcattttgtttcctttttttattacttctgttt-taagagtg-acatattt-tacgt-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863172|gb|DT012227.1|DT012227
EST:     CTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAG                         GTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
genomic: CTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttg ... gtattgttagGTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
EST: gi|71862702|gb|DT011757.1|DT011757
EST:     CTTGTGCTGGTACCATGATGGTTGCAGCATCTGCTAACTCCTTAAATCAG                         GTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
genomic: CTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttg ... gtattgttagGTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
EST: gi|71864008|gb|DT013063.1|DT013063
EST:     CTTGTGCTGGTACCATGATGGTTGCAGCATCTGCTAACTCCTTAAATCAG                         GTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
genomic: CTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttg ... gtattgttagGTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
EST: gi|71862137|gb|DT011192.1|DT011192
EST:     CTTGTGCTGGTACCATGATGGTTGCAGCATCTGCTAACTCCTTAAATCAG                         GTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA
genomic: CTTGTGCTGGTACCATGATGGTTGCAGCATCCGCTAACTCCTTAAATCAGgtttcttttg ... gtattgttagGTGTTTGAGATAAATAATGATGCTAAAATGAAGAGAACAATGAGAAGGCCA