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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGAGTATTTTCGACGCCAAGGCTGGAATTGCTCTGAATGAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttcactaaatgctcataattttaagatagagtagatgaataacatttggctgaatcgtttgtttgtgggtgttgtctgttgtag

Basic information

species Vitis vinifera
transcript Vv14s0171g00440.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0171g00440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 10
GTCGAGTATTTTCGACGCCAAGGCTGGAATTGCTCTGAATGAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgta----attttcactaaatgctcataattttaagatagagtagatgaataac---atttggctgaatcgtttgtttgtgggtgttgtctgttgtag
|||||| || |||||||||||||||||||||||||| || || |||||| ||||| | ||| | ||||| || || || |||||||||||||     | || || |  |  ||  |||   |     | | |  |||   ||     | |  ||||    | | |||     | || ||||  |   
GTCGAGCATCTTCGACGCCAAGGCTGGAATTGCTCTTAACGATAACTTTGTCAAGCTTGTCGCCTGGTACGACAACGAGTGGGGTTACAGgtgagccacttgcagttcaaactattaaccatgtacaatactccatgcccaatttgctcttactgatctttcttttttgaactattttctgcag---

upper sequence: Vv14s0171g00440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 11
GTCGAGTATTTTCGACGCCAAGGCTGGAATTGCTCTGAATGAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttcactaaatgc-tcataattttaagatagagtagatgaataacatttggctgaatcgt-ttgtttgtgggtgttgtctgttgtag---------
||| || || || || || ||||| || |||||||| ||||| |||||| | ||| | || ||||||||||| || |||||||| ||||||||||  |  |||  ||| | | ||   ||   | |  |   |   | |   |||  ||  || | | |  |  |   | | ||  ||  |          
GTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgtaatcatttctatgtgcattagaaagctatacttgttttt-tagttcatggttgtttggttcatatcgcgtaggctagctctccattagaaagctatact

upper sequence: Vv14s0171g00440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G06420.1 (Glycine max), 5'ss of exon 10
GTCGAGTATTTTCGACGCCAAGGCTGGAATTGCTCTGAATGAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttcacta--aatgctcataattttaagatagagtagatga--ataacatttggctgaatcgtttgtttgtgggtgttgtctgttgtag------
||| |||||||| || || |||||||||||| |  ||||  | || ||| | ||  | |||||||||||||| ||||||||||| |||||||||     |||   |   ||  | ||||||   |    ||  ||   |||   |||  ||   | ||     | |    |  |   |  | |       
GTCAAGTATTTTTGATGCAAAGGCTGGAATTTCATTGAACAACAATTTTGTGAAACTTGTCTCTTGGTATGACAATGAATGGGGCTACAGgtaaaacaaacttctacgccttttcattttattttcacttaagtggttatagtctttttcttttttgtcaaaatctccaggcagcaagaagcaaaactac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361128|gb|EC924581.1|EC924581
EST:     GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAG                         CTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
genomic: GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttca ... tctgttgtagCTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
EST: gi|110388021|gb|EC952735.1|EC952735
EST:     GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAG                         CTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
genomic: GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttca ... tctgttgtagCTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
EST: gi|110362323|gb|EC925850.1|EC925850
EST:     GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAG                         CTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
genomic: GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttca ... tctgttgtagCTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
EST: gi|110363991|gb|EC927628.1|EC927628
EST:     GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAG                         CTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT
genomic: GAAAACTTTATCAAGTTGGTCTCTTGGTATGATAATGAATGGGGTTACAGgtaattttca ... tctgttgtagCTCGCGCGTGGTTGACTTGATCAGGCACATTGACTCCACAAAATGAGGAGT