1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcttctttctctgtcttactatcaatagggcctaagcctatttgtagacaactcatggatgattgaacttcttgtaattattttcttgtaatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGGTCACAGTATCAAGGCCCCTGTTGGAAGATGGCAAAAAG
species | Vitis vinifera |
transcript | Vv13s0101g00090.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|294965987|gb|GW839326.1|GW839326
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|26262262|gb|CA813325.1|CA813325
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|110413752|gb|EC979558.1|EC979558
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|161705888|gb|FC055363.1|FC055363
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|26267163|gb|CA818226.1|CA818226
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|26265069|gb|CA816132.1|CA816132
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGEST: gi|71871170|gb|DT020225.1|DT020225
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
EST: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATC AATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
genomic: CTGGAAAATGTATCATCCTACCAGAGGTGGCGTTCGCGGTGGACGAGATCgtaaacgctc ... taatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTG
gtagacaactcatggatgattgaacttcttgtaattattttcttgtaatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGGTCACAGTATCAAGGCCCCTGTTGGAAGATGGCAAAAAG
ttttcttgt CT-rich tract
ttgtaattattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttctttctctgtcttactatcaatagggcctaagcctatttgtagacaactcatggatgattgaacttcttgtaattattttcttgtaatgtccagAATTTAAGTGGGATGATGTCAAGGTTGATAAACACCGAGAGAACTATCTTGGTCACAGTATCAAGGCCCCTGTTGGAAGATGGCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - ctatcaa
- - - - - - - - - - - - - - - - -ctaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - caactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttg