1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGAAAAAGTGGAAACCTATCCCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTGgtaagttcatctgtaaattttccatatcgacttatttataaatatatatctatatgtgtgtgtgtgtatatattatttgtgtgtttttacatccttacttggtcaaaagttacaagcaaaaggtttttatccttctgtttgtgtgttcccattatgaattggttaagcaactattattttgatcatgcag
species | Vitis vinifera |
transcript | Vv13s0067g03760.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTG TTGAACAAGGGTGCTAGTCCAAGCTCAGACGGTAGCCCACAGTTGAAACCTEST: gi|352781481|gb|FQ468325.1|FQ468325
genomic: CTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTGgtaagttcat ... gatcatgcagTTGAACAAGGGTGCTAGTCCAAGCTCAGACGGTAGCCCACAGTTGAAACCT
EST: CTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTG TTGAACAAGGGTGCTAGTCCAAGCTCAGACGGTAGCCCACAGTTGAAACCTEST: gi|352768550|gb|FQ467506.1|FQ467506
genomic: CTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTGgtaagttcat ... gatcatgcagTTGAACAAGGGTGCTAGTCCAAGCTCAGACGGTAGCCCACAGTTGAAACCT
EST: CTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTG TTGAACAAGGGTGCTAGTCCAAGCTCAGACGGTAGCCCACAGTTGAAACCT
genomic: CTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTGgtaagttcat ... gatcatgcagTTGAACAAGGGTGCTAGTCCAAGCTCAGACGGTAGCCCACAGTTGAAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAAAAGTGGAAACCTATCCCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAGGAATTGTCAGAAAAGCTTAAGAAGATTCCCCTGgtaagttcatctgtaaattttccatatcgacttatttataaatatatatctatatgtgtgtgtgtgtatatattatttgtgtgtttttacatccttacttggtcaaaagttacaagcaaaaggtttttatccttctgtttgtgtgttcccattatgaattggttaagcaactattattttgatcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG