Sequence
atgc intronic sequence ATGC exonic sequenceGGATGCAAGTGGAGCACAAGTGGTGGCACATGAGCTTGCTCATAGCTGGACGGGGAATCTGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgtataacatatttgttttctctgattaattcacatggttttgtttatggaatagatgcaaaatgaattgaattgagttttggtttgtctgtttattctgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g60460.1 (Oryza sativa), 5'ss of exon 1
GGATGCAAGTGGAGCACAAGTGGTGGCACATGAGCTTGCTCATAGCTGGACGGGGAATCTGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgt------ataacatatttgttttctctgattaattcacatggttttgtttatggaa---tagatgcaaaatgaattgaattgagttttggtttgtctgtttattctgt
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GGACGCTGCTGGGGCGCAAGTGGTGGCGCATGAGCTCGCGCACAGCTGGACTGGCAACCTGATCACTAACAAGACCAATGAAGATTTCTGGCTAAATGAGgtgaagtgatgaaccctccatttgttctagttg--tcgtctagatgtgcttttaggtacttagatgattgttaaagccggtgaaatttgaaattgt--gtctat-----
upper sequence: Vv13s0067g03300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G38780.1 (Glycine max), 5'ss of exon 1
GGATGCAAGTGGAGCACAAGTGGTGGCACATGAGCTTGCTCATAGCTGGACGGGGAATCTGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgtataacatatttgttttctctgattaattcacatggttttgtttatggaatagatgcaaaatgaattgaattgagttttggtttgtctgtttattctgt
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GGATGCCACCGGTGCACAGGTTGTGGCTCACGAGCTTGCTCACAGTTGGACTGGGAATTTGATCACTAACAAGACCAATGAACATTTCTGGTTGAATGAGgta----atattctcctactagtgcgttttgatttgatggcgatcatgagattgttgttc------ttgattttggttttag------------------
upper sequence: Vv13s0067g03300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G13520.1 (Arabidopsis thaliana), 5'ss of exon 1
GGATGCAAGTGGAGCACAAGTGGTGGCACATGAGCTTGCTCATAGCTGGACGGGGAATCTGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgtataacatatttgttttctctgattaattcacatggttttgtttatggaatagatgcaaaatgaattgaattgagttttggtttgtc----------tgtttattctgt--------------
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AGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGACTGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGgtagctttgaattgtcttgtgcttttgcttcttttagctacaaattaggatgtgtaactgtgtgtccgtttttagagtttgccttgttgatgggaaagtgtttatttcatgttcatggcaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782758|gb|CB348337.2|CB348337EST: TGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAG GGTTTTACAACTTATGCAGAGCGGAGAATTGTTGAGGCTGTGCAAGGGGAG
genomic: TGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgtataacata ... atgtttccagGGTTTTACAACTTATGCAGAGCGGAGAATTGTTGAGGCTGTGCAAGGGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATGCAAGTGGAGCACAAGTGGTGGCACATGAGCTTGCTCATAGCTGGACGGGGAATCTGATCACCAACAAGAATAATGAACATTTTTGGTTGAATGAGgtataacatatttgttttctctgattaattcacatggttttgtttatggaatagatgcaaaatgaattgaattgagttttggtttgtctgtttattctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatga