Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatgcaaatgagcctgcattaccaatctttccatgtttgattttcctcaaagtttcctgcaaaccggttttgatcaattcagtcttgcttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTATGCAAGGAGGACACCAGAGGGGAACCCAGGCAGGTGGACAAGTTTGGAAG

Basic information

species Vitis vinifera
transcript Vv13s0067g02560.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g02560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g60830.1 (Oryza sativa), 3'ss of exon 2
--gctatg-caaatgagcctgcattacc-aatctttccatgtttgattttcctcaaagtttcctgcaa-accggttttgatcaattcagtcttgcttgaaat--------cagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTATGCAAGGAGGACACCAGAGGGGAACCCAGGCAGGTGGACAAGTTTGGAAG
   |||   || ||  || |   || |  |||| |   ||   |  |  |||  |||| ||     |  |   || | |  || | |   ||   |   |||        |||| || ||  ||||||| ||||| |||||||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| |||||| | |||||
gtactacctcatatatgctttacttgcagaatcctaaaattacttctgatccaaaaagattatactagtaggagtatcgcacagtcctaactgtttctgaattctgcttgcagTTGACGGGGAATACGTAGAGGAAGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAGGCAGGTCGACAAGCTAGGAAG

upper sequence: Vv13s0067g02560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G027478_T02 (Zea mays), 3'ss of exon 2
gctatgcaaatgagcctgcattaccaatctttccatgtttgattttcctcaa-----agtttc---ctgcaaaccggttttgatcaattcagtcttgcttgaaat-cagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTATGCAAGGAGGACACCAGAGGGGAACCCAGGCAGGTGGACAAGTTTGGAAG
          |||   |  |||| |   |    | | ||| |||     |||     | | ||    |    ||   |   || |||   | |     | ||| | |||| || || |||||||| ||||||||||||||||| || ||||||||  | |||||| ||||||| || ||||| || |||||||| |||||| | |||||
---------ctgaaaatatattatcgcacacatccttttttattcctaacaagagagaatatcaagttatcgacgattgacgaccaaccaaattggtttcgaatttcagTCGACGGGCAATACGTGGAGGAGGGTTGGGTCGACAAGACCTGCAAGATCTGCAAGAAGGACACAAGGGGGGAGCCGAGGCAGGTTGACAAGCTAGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26263003|gb|CA814066.1|CA814066
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28963513|gb|CB342546.1|CB342546
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|29784827|gb|CB341292.2|CB341292
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28961137|gb|CB340577.1|CB340577
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28962264|gb|CB341297.1|CB341297
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28960034|gb|CB340018.1|CB340018
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26258429|gb|CA809492.1|CA809492
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|110404375|gb|EC969333.1|EC969333
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26261473|gb|CA812536.1|CA812536
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAANCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26263430|gb|CA814493.1|CA814493
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGGTAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28961159|gb|CB340589.1|CB340589
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26261600|gb|CA812663.1|CA812663
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28964918|gb|CB343951.1|CB343951
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAGCCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28961710|gb|CB340861.1|CB340861
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGAAG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|29784110|gb|CB344444.2|CB344444
EST:     AGGAAAATTGGAGGAACA-ATCAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AGGAAAATTGGAGGAACATA-CAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|110403403|gb|EC965045.1|EC965045
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26261948|gb|CA813011.1|CA813011
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28966106|gb|CB345139.1|CB345139
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26262781|gb|CA813844.1|CA813844
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATATGTAGATG                         CGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26263810|gb|CA814873.1|CA814873
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26261312|gb|CA812375.1|CA812375
EST:     AAGGAAAATTGGAGGAACTTACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26260829|gb|CA811892.1|CA811892
EST:     AAGGAAAATTGGAGGAACTTACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26257625|gb|CA808688.1|CA808688
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|29785180|gb|CB341942.2|CB341942
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28960885|gb|CB340450.1|CB340450
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28966045|gb|CB345078.1|CB345078
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26264879|gb|CA815942.1|CA815942
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTC-TCAAGTCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAGCCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26258503|gb|CA809566.1|CA809566
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26263860|gb|CA814923.1|CA814923
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28962063|gb|CB341096.1|CB341096
EST:     AAGG-AAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGAAG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26256923|gb|CA807986.1|CA807986
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26265727|gb|CA816790.1|CA816790
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28961590|gb|CB340802.1|CB340802
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26266800|gb|CA817863.1|CA817863
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTC-TCAAGTCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAGCCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26266091|gb|CA817154.1|CA817154
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|18459227|gb|BM437505.1|BM437505
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26262682|gb|CA813745.1|CA813745
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28964866|gb|CB343899.1|CB343899
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAGCCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26258593|gb|CA809656.1|CA809656
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26265773|gb|CA816836.1|CA816836
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28964418|gb|CB343451.1|CB343451
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26257810|gb|CA808873.1|CA808873
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|29786119|gb|CB343615.2|CB343615
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28961309|gb|CB340665.1|CB340665
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26263736|gb|CA814799.1|CA814799
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26259456|gb|CA810519.1|CA810519
EST:     AAGGAAAATTGGAGGAACATACAAGGATNTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26260828|gb|CA811891.1|CA811891
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|29785992|gb|CB343385.2|CB343385
EST:     AGGAAAATTGGAGGAACAGATCA-GGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AGGAAAATTGGAGGAACATA-CAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|351025225|gb|FQ433642.1|FQ433642
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|28963588|gb|CB342621.1|CB342621
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTCGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26257685|gb|CA808748.1|CA808748
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
EST: gi|26262969|gb|CA814032.1|CA814032
EST:     AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATG                         TGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT
genomic: AAGGAAAATTGGAGGAACATACAAGGATTTCTTCAAATCATACGTAGATGgtaatcactt ... ttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcaaagtttcctgcaaaccggttttgatcaattcagtcttgcttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTATGCAAGGAGGACACCAGAGGGGAACCCAGGCAGGTGGACAAGTTTGGAAG
                        ttttgat  putative branch site (score: 4)
                                       tcttgctt  putative PPT
     aaagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctatgcaaatgagcctgcattaccaatctttccatgtttgattttcctcaaagtttcctgcaaaccggttttgatcaattcagtcttgcttgaaatcagTGGATGGACAATACGTCGAGGAGGGTTGGGTCGATAAAACCTGCAAAGTATGCAAGGAGGACACCAGAGGGGAACCCAGGCAGGTGGACAAGTTTGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-ctatgca
- - - - - - - cctgcat
- - - - - - - - - - - accaatc
- - - - - - - - - - - - - - - - ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattca