Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtccctttcaatttttattttattttttctttgaaaaaacaagcattaatccatttgtaactgaaatgcccacatggtattctactgtctttgcagAACCAACAGTAAGGAATTGTGAAACTTGTGGTTCAAGCATGATTCCTTATCCTCTAAGCACTGGATCAAAGTGTGGTGATCCCATGTACTTCAATTTTGA

Basic information

species Vitis vinifera
transcript Vv12s0134g00300.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcattaatccatttgtaactgaaatgcccacatggtattctactgtctttgcagAACCAACAGTAAGGAATTGTGAAACTTGTGGTTCAAGCATGATTCCTTATCCTCTAAGCACTGGATCAAAGTGTGGTGATCCCATGTACTTCAATTTTGA
             ttgtaac  putative branch site (score: 2)
                                           ctgtcttt  putative PPT
           atttgtaa  TA-rich tract