Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383569|gb|EC947948.1|EC947948EST: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAG GTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
genomic: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAGgtgtgtgtct ... gatcctttagGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
EST:
gi|349829792|gb|FQ422105.1|FQ422105EST: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAG GTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
genomic: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAGgtgtgtgtct ... gatcctttagGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
EST:
gi|30125373|gb|CB910712.1|CB910712EST: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAG GTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
genomic: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAGgtgtgtgtct ... gatcctttagGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
EST:
gi|34415348|gb|CF414102.1|CF414102EST: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAG GTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
genomic: GAAGATGAGGAAACCCTGATCACTAGGATGTTCAATCTGGTTGGAGAGAGgtgtgtgtct ... gatcctttagGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctctgaaacttttgaatgaggccttataataagggaaaatgatgatcctttagGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGAGAAGTACTGGACTTCAAGATATTCATCAAGTGAATGAAAGGCCAGAAAA
tccttt CT-rich tract
ttataataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtgtctctgcttcttttcattcttctttttctttacttttccttctctgaaacttttgaatgaggccttataataagggaaaatgatgatcctttagGTGGTCTCTGATTGCTGGGAGAATTCCTGGAAGAACGGCAGAGGAAATTGAGAAGTACTGGACTTCAAGATATTCATCAAGTGAATGAAAGGCCAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT