1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCAAATGTGATGCGCCAGTTCATCCCTCTGATGATTGAAAACAAGCAAGGGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaatagaaaagatggttgtgtcacatctgtatcttgaatattttcctttgtcctaatcatatttttatgggtttattgttgtggtggttgttattat...
species | Vitis vinifera |
transcript | Vv12s0035g01780.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAG GTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCAEST: gi|110379850|gb|EC945071.1|EC945071
genomic: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaataga ... gtttcaacagGTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCA
EST: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAG GTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCAEST: gi|110717872|gb|EE094108.1|EE094108
genomic: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaataga ... gtttcaacagGTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCA
EST: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAG GTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCAEST: gi|352781659|gb|FQ468957.1|FQ468957
genomic: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaataga ... gtttcaacagGTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCA
EST: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAG GTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCAEST: gi|110378479|gb|EC943614.1|EC943614
genomic: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaataga ... gtttcaacagGTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCA
EST: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAG GTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCA
genomic: GGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaataga ... gtttcaacagGTTGCGCCTTATTGTGCTTCAAAATGGGCAGTTGAGGGTTTATCTAGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAATGTGATGCGCCAGTTCATCCCTCTGATGATTGAAAACAAGCAAGGGATTATTGTCAATATGTCCTCTGGGTGGGGAAGATCTGCTGCAGCACAGgtaaaatagaaaagatggttgtgtcacatctgtatcttgaatattttcctttgtcctaatcatatttttatgggtttattgttgtggtggttgttattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaga