1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTATAACACAGGAATCTTTACCTGAAACACTTAAGCTTAACCTCAATAGGCTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggatcagagtggagttaaaattcttactttttgtgctcataactttaacctaagttaatttgatacacatcattggtctattacctaagaactt...
species | Vitis vinifera |
transcript | Vv12s0034g02390.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCCEST: gi|110362002|gb|EC925508.1|EC925508
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCCEST: gi|71882773|gb|DT031828.1|DT031828
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCEST: gi|71882190|gb|DT031245.1|DT031245
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGC
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCCEST: gi|71889872|gb|DT038927.1|DT038927
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCCEST: gi|110383541|gb|EC947919.1|EC947919
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
EST: TCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCCEST: gi|71886506|gb|DT035561.1|DT035561
genomic: TCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCCEST: gi|33402106|gb|CF207733.1|CF207733
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
EST: AAGATCATTGTGATTT-CATCCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCEST: gi|71881157|gb|DT030212.1|DT030212
genomic: AAGATCATTGTGATTTCCA-CCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACC
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTEST: gi|71890110|gb|DT039165.1|DT039165
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGT
EST: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAG CATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
genomic: CTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggat ... gtaaatgcagCATTCTTGTTTGTCGACAAATCCTCATGAGTGAGGTAGCACTAGCCAACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAACACAGGAATCTTTACCTGAAACACTTAAGCTTAACCTCAATAGGCTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactggatcagagtggagttaaaattcttactttttgtgctcataactttaacctaagttaatttgatacacatcattggtctattacctaagaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA