Sequence
atgc intronic sequence ATGC exonic sequenceTTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtgatgacatgttattgaatctgctgtttttccctgggtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g35470.3 (Oryza sativa), 5'ss of exon 5
TTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtgatgacatgttattgaatct-gctgtttttccctgggtag
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TTCAGGCTTGGGCTGAGGGTTGCCCCAGGGTCTTTTGAAGGTATTCGTGTTAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgcaatgagttat-tgttttactcatactgctagatgatttgaatgttactcgttaaccatat--ttctattgtatcttgcag---------------
upper sequence: Vv11s0052g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AC202073.4_FGT001 (Zea mays), 5'ss of exon 4
TTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtgatgacatgttattgaatctgctgtttttccctgggtag
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TTTAGACTTGGGTTGAGAGTCTCGTCAGGGTTTTGTCAAGGAATTCGTGTTATGGAAGCAAAAACAGAGGCTTTTACTGTTAAAGATCACAGAGGCGAATgtatgtttat-----ttagtgtgatgtcattgttaaataatctaaca--tataggctttaaacatgaatacgt-taactaactcttttgtag------------
upper sequence: Vv11s0052g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G054109_T01 (Zea mays), 5'ss of exon 5
TTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtga-tgacat-gttattgaatctgctg-tttttccctgggtag
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TTTATACTTGGGCTGAGGATTGCTCCTGGCTTTTATGAAGGCATTCGTGTCCGAGAAGCCAAGACAGAAGCTTTCCCCGTTAAGGATCACAGAGGAGAATgtatgtgt-gatacattgttga--tttactcattagatgatacaaagattacgtgtattttttagaacttgcatcagttgcaagcatgctgattctgtatttattag
upper sequence: Vv11s0052g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G113453_T01 (Zea mays), 5'ss of exon 5
TTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtgatgacatgttattgaatctgctg-tttttccctgggtag
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TTCAGACTTGGGCTGAGGATTGCTCCTGGCTTTTGTGAAGGTATCCGTGTCCGAGAAGCCAAGACAGAAGCTTTCCCCGTTAAGGATCACAGAGGAGAATgtatgtgt-gacacactgttga--tttactcattagatgaaacaaagattacctgtatttttagaatttgcat--cgccaagcatgctgattttgtatttattag
upper sequence: Vv11s0052g01380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G25800.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtgatgacatgttattgaatctgctgtttttccctgggtag
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TTCAGGCTTGGTTTGAGGGTACCCTCTGGGTACTGTGATGGCATACGTATACGTGAAGCAAAAACAGAAGCTTTCTCTGTTAAAGATCACAGGGGCGAATgtatgtgttttctt-ttcttgttctctttttgccttgtg--cttgccacttgttttctt--ctaaatcaacatgttgttggattggttatgtgtag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110719043|gb|EE096564.1|EE096564EST: ACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAAT TGTATAAGAAACACTATCCACCTGCATTAACTGATGATGTGTGGAGATTGG
genomic: ACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcag ... ccctgggtagTGTATAAGAAACACTATCCACCTGCATTAACTGATGATGTGTGGAGATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAGGCTTGGGCTGAAGGTTGCCTTGGGATTTTGTGAAGGCATACACATACGTGAAGCCAAAACAGAAGCTTTCACTGTTAAAGATCACAGGGGGGAATgtaggttcaggctcatccttgtcttttatttattgaattattttattgttctttttcttatctgtgatgacatgttattgaatctgctgtttttccctgggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA