Sequence
atgc intronic sequence ATGC exonic sequenceGGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgtaagaatactgtaacataacacttgggacagagtggttgcctcttaagagtatttggaagtactttccatctagccttggaaatgatgaaacaggttat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 5'ss of exon 7
GGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgtaa---gaatactgtaacataacacttgggacagagtggttgcctcttaagagtatttggaagtactttccatctagccttggaaatgatgaaacaggttat
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GGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTTGATATGgtatcccgatctccctctccctctccctcacacatagcaaacaataatcatgttctttttttttcattttaactgcag-------------------------
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 5'ss of exon 11
GGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgtaagaatactgtaacataacacttgggacagagtggttgcctctta-agagtatttggaagtactttccatctagccttggaaatgatgaaacaggttat
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GGAATTATTGTATTGGCTGCTACTAATCGCCCAAATGCAATTGATGCTGCTCTTCTGCGCCCAGGGCGTTTCGATATGgta------tcccgatctccctctc---------cctctccctcacacatagcaaacaaaatcatgttctttttttcattttaactgcag-----------
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G13160.1 (Glycine max), 5'ss of exon 12
GGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgta-agaatactgtaac--ataacacttgggacagagtggttgcctc---ttaagagtatttggaa-gtactttccatcta-gccttggaaatgatgaaacaggttat
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GGAATTCTTGTTTTGGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTCATGCGTCCTGGGCGTTTTGATCTGgtgcaaaataatatcttcgacgatacttgtgattcagtttgtaacttgaattatacatgttaaaaatatatcaaggatttgtacatttacaataatgaaa--------
upper sequence: Vv10s0071g00680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G03670.1 (Arabidopsis thaliana), 5'ss of exon 11
GGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgtaagaatactgtaacataacacttgggacagagtggttgcctcttaagagtatttggaagtactttccatctagccttggaaatgatgaaacaggttat
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GGAATCCTCGTCTTGGCTGCCACAAACCGCCCGTATGCAATTGATGCTGCTCTAATGCGACCTGGTCGATTTGATCTCgtaag--tcctcatattggatcttttgatcacacgagttctgaaatagcaaacctcattgctaccctct-tcttgatttag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352781503|gb|FQ468347.1|FQ468347EST: GACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTG GTGCTCTATGTACCGCCACCAGACTTAGAAGCTCGCTATGAGATACTGTGT
genomic: GACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgtaagaatac ... gaaactgtagGTGCTCTATGTACCGCCACCAGACTTAGAAGCTCGCTATGAGATACTGTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAATTCTTGTTTTGGCTGCTACTAATCGACCTCATGCAATTGATGCTGCACTAATGCGCCCTGGACGTTTTGATCTGgtaagaatactgtaacataacacttgggacagagtggttgcctcttaagagtatttggaagtactttccatctagccttggaaatgatgaaacaggttat
- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacag