Sequence
atgc intronic sequence ATGC exonic sequencegtaaataatgttctctccacttgctgtgggcagttatttgaaaaatatttcacctgattattttaatgtttgatttagGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTGATGGAGCGCCTCCGTCAGTTTCTACAAAAGTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g05590.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g45980.1 (Oryza sativa), 3'ss of exon 8
--------------------------------gtaaataatgttctctccacttgctgtgggcagtt--atttgaaaaatatttcacctgattattttaatgtttgattt---agGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTGATGGAGCGCCTCCGTCAGTTTCTACAAAAGTGT
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gtatgttcaaaatctgttacttgatattctttttgcatattgctcctgaagatttgtgccaatgttttcatattcccagatttttagttgtttgttctccttactgacatggcagGTTGAGGGTGAAATTGATAAGCTCTCAATGGAAGAAGCTGGCTACCGTAATTGTGTCAGTGTACCAGATGGTGCACCACCGAAAGTATCCAGCAAGCTCC
upper sequence: Vv10s0003g05590.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G30660.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------------gtaaataatgttctctccacttgctgtgggcagttatttgaaaaatattt-cacctgattattttaatgtttga--tttagGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTGATGGAGCGCCTCCGTCAGTTTCTACAAAAGTGT
|| || ||| | | | | | || | | | || || | | || | | || | |||||||||| || ||| ||| |||||| |||||||||| ||||| || | |||||||||| ||| ||||||||||| || | | |||||| |||| |
gtatgtctgcatttatcaaccttacatgatgatacgattgacagat-taaactgtgaagagcagtatgttaattcttaatctgtgggaaaattaaactttagGTTGAAGGGGAACCAGATAAACTTGCAATGGAAGAGGCTGGTTTTTTCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGAGACGGTTTCTTCAAAGGAAA
upper sequence: Vv10s0003g05590.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G30680.1 (Arabidopsis thaliana), 3'ss of exon 8
------gtaaataatgttctctccacttgctgtgggcagtta---tttgaaaaatatttcacctgattattt---taatgtttga-tttagGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTGATGGAGCGCCTCCGTCAGTTTCTACAAAAGTGT
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gtatgtctgcatttatctcctttaaattatcgtacgaaactaaactgtgaagagcagtatgt-taattctttggggaaaataaaactttagGTTGAAGGGGAGATAGATAAACTTGCAATGGAAGAAGCTGGTTTTCTCAATTGTGTATCCGTTCCTGATGGAGCTCCAGCGAAGGTTTCTTCGAAGGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtgggcagttatttgaaaaatatttcacctgattattttaatgtttgatttagGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTGATGGAGCGCCTCCGTCAGTTTCTACAAAAGTGT
ttatttgaaaaatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaataatgttctctccacttgctgtgggcagttatttgaaaaatatttcacctgattattttaatgtttgatttagGTTGAGGGTGAAATAGACAAACTTTCAATGGAAGAAGCTGGATTCTACAATTGTGTGAGTGTCCCTGATGGAGCGCCTCCGTCAGTTTCTACAAAAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA