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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCATTTGGGTTCGTCACCGACAACCCCTCCAGCCGCTCCGCCATTCAGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccactttactttctatgactttgggtggtcttcattgtttttttctgatgtaaattttgtaggttgtcttgtttcttcattttttttatgaatt...

Basic information

species Vitis vinifera
transcript Vv09s0002g07500.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g55180.1 (Oryza sativa), 5'ss of exon 1
CAACCCATTTGGGTTCGTCACCGACAACCCCTCCAGCCGCTCCGCCATTCAGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtga-gaccactttac----tttctatgactttgggtggtcttcattgtttttttctgatgtaaattttgtaggttgtcttgtttc-ttcattttttttatgaatt
|||||| || |||||||| || |||||||| || ||||||  |||||| ||||| || |||   |||||| ||||||||||||||||||| ||||||||||| | | ||||||  |      ||  ||| |  |        ||||||||      |  |   |   |   | ||  ||| |   | | ||               
CAACCCGTTCGGGTTCGTGACGGACAACCCGTCGAGCCGCGGCGCCATCCAGCTGCCGGAGTCGCCCGCCCAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcccacttcgccacacctccttgattccgaactcgtatcattgttgaccatttctagtatgctgtaaagtaatctcgacgcgtgcag--------------

upper sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G117531_T02 (Zea mays), 5'ss of exon 1
CAACCCATTTGGGTTCGTCACCGACAACCCCTCCAGCCGCTCCGCCATTCAGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccactttactttctatgactttgggtggtcttcattgtttttttctgatgtaaattttgtaggttgtcttgtttcttcattttttttatgaatt----
||| || || |||||||| || ||||||||||||||||||  |||||| ||||| |||| |  ||||||||||||||||||||||||||| ||||||||||| |  ||   |||  | |   | |||||  |  |   | |  |  | |||||||   |     |       | |       || | |  | ||  || |    
CAATCCGTTCGGGTTCGTGACGGACAACCCCTCCAGCCGCAGCGCCATCCAGCTGCCCGCGGTTCCCGCCGAGGACGGCAATGTCGGCCAGATGCTCTACgtaatgcc---ttatatgcctcg-ctttgtctacttgacttcttcgtcttctgattacagagcagggaaccatatatagaagtcttgtgctctaccaactgagc

upper sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G52510.2 (Arabidopsis thaliana), 5'ss of exon 1
CAACCCATTTGGGTTCGTCACCGACAACCCCTCCAGCCGCTCCGCCATTCAGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccactttactttctatgactttgggtggtcttcattgtttttttctgatgtaaattttgtaggttgtcttgtttcttcattttttttatgaatt
    ||    |    || ||  | |  ||       |  |       |      |      ||| |      | || |  ||        ||     | | ||   |   ||| |||    ||| ||    |    ||  || |  |  | | || |   | |||   ||| | ||||   || |               
--CTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACGTAAATTTCACATATTTACTCAGTTCAATTTTGAACTGTGATTGAAATTGAAAAGA-TGCATGgttcatatttgcttctattgatttcaaattccattttttatcatagtgttatatttttgttgattgttatgttgtgggtttag--------------

upper sequence: Vv09s0002g07500.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G52510.1 (Arabidopsis thaliana), 5'ss of exon 1
CAACCCATTTGGGTTCGTCACCGACAACCCCTCCAGCCGCTCCGCCATTCAGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgag----accactttactttctatgactttgggtggtcttcattgtttt-----tttctgatgtaaattt-tgtaggttgtcttgtttcttcatttttt-ttatgaatt----------------------------------
 ||||||||||| ||||| || |||||||| || |||||    || |||||| | || |||  ||| || || ||||||||||||||||||||||||||||| |     ||   ||||||   |   | ||||    ||  |     ||       |   || |  | ||||   |   |||  ||     | |||||||| | ||    |                                  
TAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACCAGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACgtaaatttcacatatttactcagttcaattttgaactgtgattgaaattgaaaagatgcatggttcatatttgcttctattgatttcaaattccattttttatcatagtgttatatttttgttgattgttatgttgtgggtttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830343|gb|FQ420603.1|FQ420603
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCATGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|30321334|gb|CD004596.1|CD004596
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351040934|gb|FQ443710.1|FQ443710
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|349832835|gb|FQ422957.1|FQ422957
EST:     AGCTTCCCGAGAGTCCCGCCGAGGATGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351056671|gb|FQ443298.1|FQ443298
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351014571|gb|FQ437573.1|FQ437573
EST:     AGCTTCCCGAGAGTCCCGCCGAGGATGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351024626|gb|FQ433041.1|FQ433041
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|352794161|gb|FQ479403.1|FQ479403
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|161716670|gb|FC065566.1|FC065566
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351040019|gb|FQ425105.1|FQ425105
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351051549|gb|FQ450101.1|FQ450101
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351045276|gb|FQ451724.1|FQ451724
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|351054751|gb|FQ462781.1|FQ462781
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG
EST: gi|110712220|gb|EE089589.1|EE089589
EST:     AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGTCAAATGCTCTAC                         AGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAAGTCTGGGGAG
genomic: AGCTTCCCGAGAGTCCCGCCGAGGACGGCAATGTCGGCCAAATGCTCTACgtgagaccac ... ctaattctagAGGATAGAAGACAAGGGAAAGGAGTATGGTTCTTACATCAGGTCTGGGGAG