Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAAgtatggttctgttattcctactctcatgatttttggattttcataatatgcgtgaaacttttttcatttgttgatataattgaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 3
GTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAAgtatggttctgttattcctactctcatgatttttggattttcataatatgcgt---gaaacttttttcat---ttgttgatataattgaacag----------------------
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GTGGCTTTGAAGTTTGAGCATAGAACCAGCAAAGGATGTAACTATGGGCCACCGTATGAGTGGCAAGTTTACAAgtg-agcgttatggtctcttgtctt-tggctctaggattcatcttctgcttgttcaaatagtttgtttataaaaggatgagataactaatgatgctttatcatctgttcgtccag
upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAAgtatggttctgttattcctactctcatgatttttggattttcataatatgcgtgaaactttt-ttcatttgttgatataattgaacag------------------------------------------------------------------------------
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GTAGCTTTAAAGTTTGAACATCGGAGCAGCAAGGGTTGCAATTATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgaaccgactcagtcctttctatcct---ttgctacaatgtcattggaattgctgttccaattctagcctcatcgtggaggttatttttgtgctgtcgggttcaatctaattaggtcataaatgttaatggtgatgataatccttggttgttgcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352777715|gb|FQ466768.1|FQ466768EST: AGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAA CACTTTGGGTGGAAGTCATGGTGTACCGAGAGTCCACTTTAAGGGTCGACA
genomic: AGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAAgtatggttct ... aattgaacagCACTTTGGGTGGAAGTCATGGTGTACCGAGAGTCCACTTTAAGGGTCGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAAgtatggttctgttattcctactctcatgatttttggattttcataatatgcgtgaaacttttttcatttgttgatataattgaacag
- - - - - - - - - - - - - AGCAAG