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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCAAATGGGGTTGCTCCCAAAAGAGGAATGATCCTTCCCTTCACTCCCCTCGCCATGTCCTTTGACGATGTGAACTACTATGTGGACATGCCACCGgtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacag

Basic information

species Vitis vinifera
transcript Vv09s0002g03560.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 10
-GGCCGCAAATGGGGTTGCTCCCAAAAGAGGAATGATCCTTCCCTTCACTCCCCTCGCCATGTCCTTTGACGATGTGAACTACTATGTGGACATGCCACCGgtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagact-gtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacag
 ||  |||| ||  | || ||| | |||||||||| | ||||| || ||||| ||  ||||||| ||||| ||||||||||||||||| ||||||||  | || ||  | ||| | |||   |  | ||   | ||        |   | ||  ||    |||   | | | || |      | | |  | | ||     | |  ||                   
TGGTAGCAA-TGAAGCTGGTCCAAGAAGAGGAATGGTTCTTCCATTTACTCCTCTATCCATGTCTTTTGATGATGTGAACTACTATGTCGACATGCCTGCAgtgagtttacctatgcttaacttctcttggcatcttgtcctgttccctgtcgtatcctcaatcgaaaatttgtaatatttgattgagattaatgttt-tatacatag------------------

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 14
-GGCCGCAAATGGGGTTGCTCCCAAAAGAGGAATGATCCTTCCCTTCACTCCCCTCGCCATGTCCTTTGACGATGTGAACTACTATGTGGACATGCCACCGgtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacag
 ||| |||| ||  | |||||| | |||||||||| | ||||| ||||  || || || ||||| |||||  |||||||||||||||| ||||||||  |||| ||    ||||    |  |    |    |       |  |||   || |   |    ||| |  |  ||| | ||  || ||    |||||     |     || ||| ||| |     |||
TGGCAGCAA-TGAAGCTGCTCCAACAAGAGGAATGGTTCTTCCATTCAACCCTCTTGCTATGTCTTTTGATAATGTGAACTACTATGTTGACATGCCTGCGgtgagttgaccttcgagtattctcagcagttgttcctgtcccatttcttacct-tcttcaatgt--gcttgt-acggtaaaatatggaaactg-----atggggaattctattgtttgcc-cag

upper sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G15210.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCCGCAAATGGGGTTGCTCCCAAAAGAGGAATGATCCTTCCCTTCACTCCCCTCGCCATGTCCTTTGACGATGTGAACTACTATGTGGACATGCCACCGgtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacag
 |      |  | ||     |||| | ||||||| | ||||| |||||||| || || ||||| ||||||||||| || |||| ||| ||||||||  |||||| | |       ||  |||    ||| |      || | || ||   ||||   ||||  | | |  |    ||       |                                       
TGAGATGGAGAGTGTGAGCGCCAAGAAAGGAATGGTTCTTCCTTTCACTCCTCTAGCTATGTCATTTGACGATGTTAAATACTTTGTTGACATGCCTGCGgtaatactttgaaaacta-gttaaacttattgttattatta-atagaaa-caaaaaaagaaactcatatagaattggatggtgcag--------------------------------------