Sequence
atgc intronic sequence ATGC exonic sequenceGTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagactaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g56580.2 (Oryza sativa), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaa---gactaattgtggttaaattt----gttttaaatttaaaggcttaaattat----cattttgatttttgtttttctttctttttcccccttgaaaag
||||| ||||| || |||||||| || || || || ||||||||||||||||| |||||||||||||| || | |||| |||| ||| | | | | ||| | || || | | | ||| | | || || | | | | || | |
GTAGCTTTGAAATTCGAGCACCGCAACAGTAAGGGTTGCAATTATGGCCCTCCATATGAGTGGCAAGTTTATAGgtaattgcactataataagttgagtattacaatcttagagataggatctcagagactcggacataataaaagttattgtgcaatatcttgattcttgcct---
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaag-actaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
|| ||||||||| ||||||| || || || ||||| ||||||||||| | || |||||||||||||| ||| |||| | ||| | | || | ||| ||| | | ||| | | | || ||| | | || ||||| || |
GTTGCATTGAAGCTTGAGCATCGAAACAGTAAAGGGTGCAATTATGGTGCCCCCTATGAGTGGCAAGTTTACCAgtatgtacttaatacagtcatctttcatttgtaccaga----ttattctctgctctttgagtttactgattattacctttcctactag-----
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagactaattgtggttaaatttgttttaaat-ttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag---------
|| || ||||| ||||||||||| || ||||| || ||||||||||||||||| |||||||||||||| || | |||| || | |||| | || ||| |||| | || ||||| | | || | | | || | | |
GTTGCTTTGAAATTTGAGCACCGAAACAGCAAGGGCTGCAATTATGGCCCTCCATATGAGTGGCAAGTTTATAGgtaa--ttacattatattaagccgaaagtgtatattatgctcttatagaataattttagggatcatggttataaaaaatgtactctaaacatggtgtatcat
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaag--actaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
|| |||||||| || ||||| || || || |||||||||||||||||||| || |||||||||||||| || ||||| | || || || || ||| ||| | ||| | || | || ||| | ||| || ||| |
GTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCCCATATGAGTGGCAAGTTTATAAgtatgttgctcatcctg-ttgtctttcctttg---tcgtgggcactatttct--ttctgactattggcattgtttgctag--------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G164265_T03 (Zea mays), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaag--actaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
|| |||||||| || ||||| || || || ||||||||||||||||||||||| ||||||||||| || || ||||| | || || || | ||| |||| | | || ||| || || ||| | ||| | || ||| |
GTCGCATTGAAATTAGAGCATCGAAACAGTAAAGGATGCAATTATGGCCCTCCATATGAGTGGCAGGTTTATAAgtatgttgctcatcctgccttcttttctttt---tgtggagactt------tctttctgactattggtattgtttgctag--------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G110085_T01 (Zea mays), 5'ss of exon 1
---------------------------GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaag--actaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
|| |||||||| || ||||| || || || |||||||||||||||||||| || |||||||||||||| || ||||| | || || | || ||| ||| | | ||| | || | || ||| | ||| || ||| |
TTATGAATCAATCAATTACCTGAGACAGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCC-CCATATGAGTGGCAAGTTTATAAgtatgttgctcatccta-ttgtctttcctttg---tcatgggcactatttct--ttctgactattggcattgtttgctag--------------
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaag------actaattgtggttaaat--ttgttttaaatttaaaggcttaaattatcattttgatttt----tgtttttctttctttttcccccttgaaaag-------------
|| ||| | |||||||||||| | || |||||||| ||||| ||||| |||||||||||||||||||| |||| ||| | | |||| ||||| | | || || | | || ||| || ||| || | || || | | || || | ||| ||
GTTGCACTTAAGTTTGAGCACAGAAACAGCAAAGGTTGCAACTATGGGCCTCCTTATGAGTGGCAAGTATACAGgtaggtaatctgttctttgtatttaaacaacattatcaagaatacatgttttttttaatcttcagatgttctaatattattatctaattctcacatttgtaatttgacattgataag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 4
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagacta------attgtggttaaatttgttt--taaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
|| || |||| |||||||| || ||||||||||||||||||| ||| || ||||| ||||||||||| |||||||||| || ||| | ||||||| | |||||| | | || |||| || | || | | | | | | ||| | | ||| ||||
GTGGCCCTGAAATTTGAGCATCGAAATAGCAAAGGATGCAATTTTGGTCCACCTTACGAGTGGCAAGTGTACAAgtaagtcttgcatgcattctatgtaaattttcctgccaaatttctctgatcaacttat--ttgtcatctc-atctgtttctttttcttcttgttgtaaag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 3
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagactaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag---------------------------------------------------------------------------
||||| || |||||||| || |||| ||||| || ||||||||||| |||||||| ||||||||||| ||||||| | || | | | | || || || || | | ||||| ||| |||| || || | | ||
GTAGCTTTAAAGTTTGAACATCGGAGCAGCAAGGGTTGCAATTATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgaaccgactcagtcctttctatcctttg----ctacaatgtcattggaattgctgttccaattctagcctcatcgtggaggttatttttgtgctgtcgggttcaatctaattaggtcataaatgttaatggtgatgataatccttggttgttgcgcag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 3
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagactaattgtggttaaatt-tgttttaaatttaaaggcttaaat-----tatcattttgatttttgtttttctttctttttcccccttgaaaag--------------------------------------------------
|| || |||||||| ||||| |||| ||| || || ||||||||||| ||||||||||||||||| || |||| || | || | | || ||| || ||| | | | || | | | | || || | | | | | | | | ||||| | | ||
GTTGCGTTGAAGTTCGAGCATCGGAGTAGTAAGGGCTGCAATTATGGTCCTCCTTATGAGTGGCAGGTTTACACgtgcgtctcaagcttgtaccattgtgatttcactcttgagatgtgattgctagtgtcgcatttacctctctgtatttcttattttcatcatcaaatgtgattagggcttgtctcctaaccttgatggctggcgcgggtctttctgcag
upper sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 3
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgta---agactaattgtggttaaatttgttttaaatttaaaggcttaaattatcat-tttgatttttgtttttctttctttttcccccttgaaaag
|| || ||||||||||| ||| | | || ||||||||||| ||||| ||||| |||||||||||||| |||| ||| || | || ||| | ||| | || || ||| |||| | ||| || ||||
GTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACACgtatgtagcattgttttggctttttttttctttgtgttttgtttctaagctatcgtgttttatgtttgcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385816|gb|EC950372.1|EC950372EST: AATAGCAAAGGATGCAATTATGGCCCTCCTTACGAGTGGCAAGTCTACAA CACTCTAAATGGTTGCTATGGGATTCCCTGGGTTCACTACAAGGGTCGCCA
genomic: AATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagactaa ... ccttgaaaagCACTCTAAATGGTTGTTATGGGATTCCCTGGGTTCACTACAAGGGTCGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAAgtaagactaattgtggttaaatttgttttaaatttaaaggcttaaattatcattttgatttttgtttttctttctttttcccccttgaaaag
- - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - AGGATG