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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCGTACACAGCATCCTCGTTCACAAATCCAACGAGGACAAGATCATGGTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttttctctgatcggggattttctgttgggttcgtgggaaaacaggggggaaatttgagaaaaggagattttgaatcttgtgttccgtgacatt...

Basic information

species Vitis vinifera
transcript Vv07s0151g00690.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0151g00690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G44200.1 (Glycine max), 5'ss of exon 1
CAGCCGTACACAGCATCCTCGTTCACAAATCCAACGAGGACAAGATCATGGTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttttctctgatcggggatt-ttctgttgggttcgtgggaaaacaggggggaaatttgagaaaaggagattttgaatcttgtgttccgtgacatt
| || || |||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| ||||| ||| | | ||| ||||||||   ||| ||||||| | |  | |||  | |  ||| || |||| |     ||      || |           ||             |||   | ||               
CGGCGGTGCACAGCATCCTCGTCCACAAGTCCAACGAGGACAAGATCATGCTTCTCGATTCCCACAAACTCATCGCCGCTAGCGGCGAGCCCGGAGACAGgtatctactatctaggcttagggtttcttctctcccactctcttccaatcctcttatccccttc-----------ctttctcttttag-------------

upper sequence: Vv07s0151g00690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G38970.1 (Glycine max), 5'ss of exon 1
CAGCCGTACACAGCATCCTCGTTCACAAATCCAACGAGGACAAGATCATGGTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttttctctgatcggggatt-ttctgttgggttcgtgggaaaacaggggggaaatttgagaaaaggagattttgaatcttgtgttccgtgacatt
| || || |||||||||||||| ||||| ||||||||||||||||||||| | || ||||| ||||| ||| | | ||| ||||||||   ||| ||||||| | |  | |||  | |  ||| || |||| |     ||      || |    |    ||              || ||  | | | |||| |       
CGGCGGTGCACAGCATCCTCGTCCACAAGTCCAACGAGGACAAGATCATGCTCCTCGATTCCCACAAACTCATTGCCGCTAGCGGCGAGCCCGGAGACAGgtatctactatctagggttagggtttcttctctcctactctcttccaatcctctg----atcccgttcctttccgttctgt-tttagggttcag-------

upper sequence: Vv07s0151g00690.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G22630.1 (Arabidopsis thaliana), 5'ss of exon 1
CAGCCGTACACAGCATCCTCGTTCACAAATCCAACGAGGACAAGATCATGGTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttttctctgatcggggattttctgttgggttcgtgggaaaacaggggggaaatttgagaaaagga--gattttgaatcttgtgttccgtgacatt
| || || || || |||||  ||||||||  |||||| |||||||||||||| ||||| || ||||||||  | |  || || |||||    || ||| |||   ||  | ||| |||       | ||| |  |   |   | ||   || || | |  | |  |    ||  |  || | || ||| | |   | |    
CGGCGGTTCATAGTATCCTTCTTCACAAAAACAACGAAGACAAGATCATGGTACTTGACTCACACAAGCTTGTTGCTGCTAGTGGCGAGCCTGGTGACCGgtaatttcctcctccgatactcttctctctctctgtagctctgtaatttagcggtggaggtagtaattttgactgtcttcggattttgggattgattag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351027925|gb|FQ425826.1|FQ425826
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110403110|gb|EC964285.1|EC964285
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110699250|gb|EE076082.1|EE076082
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110363790|gb|EC927406.1|EC927406
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110703813|gb|EE080985.1|EE080985
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351030076|gb|FQ430818.1|FQ430818
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110390738|gb|EC955664.1|EC955664
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|30295967|gb|CB972761.1|CB972761
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|349828178|gb|FQ415506.1|FQ415506
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110706807|gb|EE082666.1|EE082666
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|33403312|gb|CF208939.1|CF208939
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110402648|gb|EC960663.1|EC960663
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|30295894|gb|CB972688.1|CB972688
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|30252808|gb|CB970359.1|CB970359
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110732072|gb|EE107038.1|EE107038
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351045307|gb|FQ451755.1|FQ451755
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351028405|gb|FQ427301.1|FQ427301
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|22014007|gb|BQ799041.1|BQ799041
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110728122|gb|EE103412.1|EE103412
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110700002|gb|EE077542.1|EE077542
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|29783032|gb|CB348882.2|CB348882
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|349825478|gb|FQ419395.1|FQ419395
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110387453|gb|EC952118.1|EC952118
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351022569|gb|FQ447091.1|FQ447091
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|26265336|gb|CA816399.1|CA816399
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110701621|gb|EE079401.1|EE079401
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|29782995|gb|CB348801.2|CB348801
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110422878|gb|EC989211.1|EC989211
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|71871550|gb|DT020605.1|DT020605
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110429020|gb|EC995507.1|EC995507
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110732936|gb|EE108658.1|EE108658
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|30330080|gb|CD013342.1|CD013342
EST:     TTC-TGATTTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTNTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: TTCTTGA-TTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|33403390|gb|CF209017.1|CF209017
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|22007591|gb|BQ792625.1|BQ792625
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351040255|gb|FQ425341.1|FQ425341
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110689528|gb|EE065829.1|EE065829
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351040376|gb|FQ434509.1|FQ434509
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGGAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351019822|gb|FQ439639.1|FQ439639
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110685445|gb|EE062169.1|EE062169
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110408267|gb|EC973898.1|EC973898
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110409827|gb|EC975499.1|EC975499
EST:     CTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: CTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351019274|gb|FQ429434.1|FQ429434
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|349828179|gb|FQ415507.1|FQ415507
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|294965356|gb|GW837071.1|GW837071
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351031307|gb|FQ445332.1|FQ445332
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110426163|gb|EC992561.1|EC992561
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110411047|gb|EC976747.1|EC976747
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|30252461|gb|CB970012.1|CB970012
EST:     GTTCTTGATTCTCACAAGCTCTTGGGTGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|349814988|gb|FQ410211.1|FQ410211
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351015374|gb|FQ447203.1|FQ447203
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|349828751|gb|FQ418486.1|FQ418486
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|351028332|gb|FQ427228.1|FQ427228
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
EST: gi|110391982|gb|EC957072.1|EC957072
EST:     GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAG                         AGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG
genomic: GTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttt ... ggttttgcagAGCTCAGTTTACGGAGTACATACAGAAGAATGTAGCGTTGTATCAGTTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCCGTACACAGCATCCTCGTTCACAAATCCAACGAGGACAAGATCATGGTTCTTGATTCTCACAAGCTCTTGGGCGCCAGCGGCGAAGGCGGCGACAGgtctgttttttctctgatcggggattttctgttgggttcgtgggaaaacaggggggaaatttgagaaaaggagattttgaatcttgtgttccgtgacatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa