1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gtttctttttccattatgttctcttccttttcttactttctttttccctctgttttgtactgttattgtgtctctgttggtatgctgccaacacttgcagGATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATATCCCATAACAGTGGAAGTGCTCCATCAAGTGTTTTCTCCTCATGGGTTTG
species | Vitis vinifera |
transcript | Vv07s0031g02030.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGAACTTACTACAATGGATCAAAATTCTCAAGGACGCAAAGGTGACCAG GATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATATEST: gi|71862698|gb|DT011753.1|DT011753
genomic: AAGAACTTACTACAATGGATCAAAATTCTCAAGGACGCAAAGGTGACCAGgttggttact ... acacttgcagGATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATAT
EST: AAGAACTTACTACAATGGATCAAAATTCTCAAGGACGCAAAGGTGACCAG GATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATAT
genomic: AAGAACTTACTACAATGGATCAAAATTCTCAAGGACGCAAAGGTGACCAGgttggttact ... acacttgcagGATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATAT
ccctctgttttgtactgttattgtgtctctgttggtatgctgccaacacttgcagGATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATATCCCATAACAGTGGAAGTGCTCCATCAAGTGTTTTCTCCTCATGGGTTTG
ttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttttccattatgttctcttccttttcttactttctttttccctctgttttgtactgttattgtgtctctgttggtatgctgccaacacttgcagGATGCTCAACCCAATCGAATTCTCTTAGTCACTATTCATCACCTACTATATCCCATAACAGTGGAAGTGCTCCATCAAGTGTTTTCTCCTCATGGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - ttccatt
- - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcca