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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtttttatgtatgt...

Basic information

species Vitis vinifera
transcript Vv07s0005g00840.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G01940.1 (Glycine max), 5'ss of exon 3
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtttttatgtatgt-----
|||||||| ||| | ||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||| | ||||| || ||||||||||||||||| |   ||||    |  ||   | |  ||||    |    |||  |  | | | || |  |||        |  |   | |  | ||   |   |       
AAGGATGGGTTTATTATCAGGAAGCCAACTAAGATTCACTCTCGCTCTCGTGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGCCACTCTGGATATGgtatgtaacttttt--ctaacaccaagtgtgttt---atgcaaattgcaaatgagtctgtggtcatcaaacattgacaccttgtaggattcactaggttaaattg

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G01950.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgt----atttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtttttatgtatgt
|||||||| ||| | ||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||    |||| |||  | |  |      |||||  ||| ||  ||     ||   | | ||||   |       | |  ||||| |   || |  | ||     
AAGGATGGGTTTATTATCAGGAAGCCGACTAAGATTCACTCTCGCTCCCGTGCTCGTCGAATGAAGGAGGCCAAGAGAAAGGGGCGTCACTCTGGTTATGgttcgtatttatatcctcaagtcctcaacattaa-ttttaatgaattcaaattcatgagtttggacattacacattgctgaatattccctggtaatttggt---

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G02060.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgca-ttaggtttcaagtaaggattatattttattt-tgagaacattt--tttgggggaataatatttgtttttatgtatgt
|||||||| ||| | ||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||| | ||||| ||||||||||| ||||||  |  |||||| | |||  ||  | |||  |    |  |   ||| | ||| |||| |||  |  | |  ||   | |    | | ||  | ||  |||   
AAGGATGGGTTTATTATCAGGAAGCCAACTAAGATTCACTCTCGCTCTCGTGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGCTATGgt--tcgtatttttattttatatttagttatatcctcaacattaattttttttcatttctgatgatttctaattcatgagttggacacttcatgttg-gtaaa-

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G02050.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtattt---ttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattt----tttgggggaataatatttgtttttatgtatgt
|||||||||||  | ||||||||||||||||| |||||||| || || ||||| ||  ||||||||||||||||| | ||||| ||||||||||| |||||||| |   || || | |  ||   ||  ||   |   || |    || |   | |  |     |||||||      | |  | || | | |   ||  ||      
AAGGATGGTTTCATTATCAGGAAGCCAACTAAGATTCATTCCCGTTCCCGTGCTCGCAGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGTTATGgtatgtaactttttctaacattaagtgtgtttt-tgctaattgcaaatgaacctgtggtcatcaaacatttaaaaccttgtaggattaaactgagttgcat------

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G37460.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttatt-ttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtttttatgtatgt---
|||||||| ||| ||||||||||||| || || ||||| || || || ||||| |||||||||||||| |||||| | || || |||||||||||||| ||||||||||||    |   |   | |  ||| | | ||        ||| |  | ||||| | |     |    |    ||   |||||||  | |||  |   
AAGGATGGGTTTATCATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCTCGTCGAATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGATACGgtatttttattaccaaccctatctaccctag-tgtgaatccgattctatctcatgttttggggattcaatccaagt---taggctttgtttggaagtacttgtt

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G40080.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtttttatgtatgt---
|||||||| ||| | ||||||||||| || || ||||| || || || ||||| || ||||||||||| |||||| | || || |||||||||||||||||||||||||||   |      ||    ||   ||    |  |||||         || |     ||||    | ||  |||  | | |||  || ||| |   
AAGGATGGGTTTATTATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCCCGCCGAATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGATATGgtatttttattcccaaccccaattacctaatgttt---tggggattcagcccacgttaggccctatttggaagaggtgtaaagtctatttggatttatttatg

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G36920.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtt-tttatgtatgt-
|||||||| ||| |||||||||||||||| || ||||| ||||| || ||||| ||| | ||||||||||| |||   ||||| || |||||||| ||||||||||  |||   |  ||  |     |   | ||||  || |||      |    ||| | ||| ||    |   |  ||||||||     |||     | 
AAGGATGGGTTTATCATCAGGAAGCCAACCAAGATTCACTCACGCTCGCGTGCTCGTAGGATGAAGGAGGCAAAGAAGAAGGGCCGGCACTCTGGTTATGgtattt--attcccaactttaacttgattaatatcaataaatgatccgggatgtaattgtggacagttcgaagttaatgaatatttggagcctattgtcatg

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G39570.1 (Glycine max), 5'ss of exon 2
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgcattaggtttcaagtaaggatta-tattttattttgagaacattttttgggggaataatatttgtttttatgtatgt
|||||||| ||| |||||||||||||||| || ||||| || || || ||||| ||| | ||||||||||| ||| | ||||| || ||||| || |||||||||||| ||   |  ||  |    |    | | || |||  |||| ||  | || | | |   | ||    |  |  |    ||  |   | | |    
AAGGATGGGTTTATCATCAGGAAGCCAACCAAGATTCACTCCCGCTCACGTGCTCGTAGGATGAAGGAGGCAAAGAGGAAGGGCCGCCACTCCGGTTATGgtattttttttcccaactttaacttgtataatgtaaaataaatattaataaatgatctggggtgtaattgcgagcagtttggagttaatgaatgtttgga-

upper sequence: Vv07s0005g00840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S50_102V6.1 (Physcomitrella patens), 5'ss of exon 1
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATAT-Ggtatttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttg--tttttatgtatgt
  |  || |  || |  | |    |        |  |      |   ||   |  ||  |  ||| | | |   |    ||||  | ||  ||    |      |  | | |  ||    ||  |  |  | |||    | ||     |   | || ||| |      ||  |         | ||    || |   | |  |
--GCGTGCTCGTGCCCGCCGCGCTCTTGAGGCCAAGCGGAAGGGGCGTCACTCTGGTT-ACGGAAAGCGCCGCGGTACCAGGGAAGCCAGACTCCCCACCAAGgtactaactacgatgccgccggtgtgggtttttggatcagtccagttcctgatgttgggtttgggttgcgatcattctgtgttgaaattctcggggagtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724575|gb|EE100525.1|EE100525
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCGGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTCTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|71872386|gb|DT021441.1|DT021441
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351029171|gb|FQ435371.1|FQ435371
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110732970|gb|EE108720.1|EE108720
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCGGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTCTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|30304767|gb|CB981561.1|CB981561
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351055634|gb|FQ452099.1|FQ452099
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351024472|gb|FQ426281.1|FQ426281
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351014864|gb|FQ438064.1|FQ438064
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351022117|gb|FQ438702.1|FQ438702
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGGGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|33408900|gb|CF214527.1|CF214527
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|34546384|gb|CF514616.1|CF514616
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGACTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110371687|gb|EC935807.1|EC935807
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351024021|gb|FQ423444.1|FQ423444
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110731771|gb|EE106472.1|EE106472
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351014839|gb|FQ438039.1|FQ438039
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110730114|gb|EE106822.1|EE106822
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|77588358|gb|DV223394.1|DV223394
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCGGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTCTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351040367|gb|FQ434500.1|FQ434500
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|27585907|gb|CB008602.1|CB008602
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|71868499|gb|DT017554.1|DT017554
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|87585169|gb|DY473998.1|DY473998
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351012973|gb|FQ433700.1|FQ433700
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351026581|gb|FQ432479.1|FQ432479
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|71873302|gb|DT022357.1|DT022357
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCGGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTCTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351027920|gb|FQ425821.1|FQ425821
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110701696|gb|EE079564.1|EE079564
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|71867727|gb|DT016782.1|DT016782
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351021481|gb|FQ446025.1|FQ446025
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110731151|gb|EE109043.1|EE109043
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351023997|gb|FQ423420.1|FQ423420
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351030956|gb|FQ438992.1|FQ438992
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351022576|gb|FQ447098.1|FQ447098
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|30134335|gb|CB919673.1|CB919673
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|77587621|gb|DV222985.1|DV222985
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351041272|gb|FQ447399.1|FQ447399
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351023883|gb|FQ423306.1|FQ423306
EST:     TGCACGTCGAATGAAGGA--CCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|349824755|gb|FQ414613.1|FQ414613
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACCCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|34549391|gb|CF517623.1|CF517623
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|77579559|gb|DV218626.1|DV218626
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110685330|gb|EE063629.1|EE063629
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110726071|gb|EE103116.1|EE103116
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCGGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTCTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|77585652|gb|DV221920.1|DV221920
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|110727688|gb|EE104735.1|EE104735
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|351030965|gb|FQ439001.1|FQ439001
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|30304979|gb|CB981773.1|CB981773
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|30124803|gb|CB910142.1|CB910142
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA
EST: gi|30296168|gb|CB972962.1|CB972962
EST:     TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCGGGATATG                         GTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTCTGGA
genomic: TGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttat ... ataatttcagGTAAGCGTAAGGGTACGAGGGAGGCTAGGCTTCCAACCAAAATCCTGTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGGATGGTTTTGTCATCAGGAAGCCAACTAAAATTCATTCACGATCTCGTGCACGTCGAATGAAGGAGGCCAAGCGAAAGGGGCGTCACTCTGGATATGgtatttttattttgagtttgcatgcattaggtttcaagtaaggattatattttattttgagaacattttttgggggaataatatttgtttttatgtatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataa