Sequence
atgc intronic sequence ATGC exonic sequence...gtcttatccaaggttacttgttggaaaaaagtaaccttctgtttgcaggcaaagtttgtaatttcgtccatcaggcctaaagactcccttctgtttgcagGCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCATTACTCCATGGTTAGTATCCTGTCAGAGGTTTGTACCAAGCTCTTGCCA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351019715|gb|FQ439532.1|FQ439532EST: CAATTGGAAAGACGCTCCACTTTCATTCGACATCGTTGATCTGATCGAAG GCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCA
genomic: CAATTGGAAAGACGCTCCACTTTCATTCGACATCGTTGATCTGATCGAAGgtaaccctca ... ctgtttgcagGCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caggcaaagtttgtaatttcgtccatcaggcctaaagactcccttctgtttgcagGCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCATTACTCCATGGTTAGTATCCTGTCAGAGGTTTGTACCAAGCTCTTGCCA
gcctaaa putative branch site (score: 3)
ctcccttctgtttgc putative PPT
aaagtttgtaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttatccaaggttacttgttggaaaaaagtaaccttctgtttgcaggcaaagtttgtaatttcgtccatcaggcctaaagactcccttctgtttgcagGCACGACCCCTGTTCAAAGACCGGAGGAAATTCTCACAGATGGCTGACCCATTACTCCATGGTTAGTATCCTGTCAGAGGTTTGTACCAAGCTCTTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - cttgttg
- - - - - - - - - - - -gaaaaaa
- - - - - - - - - - - - - - - - - -cttctgt
- - - - - - - - - - - - - - - - - - - - - - gcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcag