1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcattgttcaatttctcttggaaatcatgcttctgtaaccatttatccaggtcaagttattgataccatattactttgcttgctgactctgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAACGGAGGCCATTGTGGCAGACACTTCTCTCATTTTTCTGGCCTGTGTTGA
species | Vitis vinifera |
transcript | Vv06s0004g02280.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCT GATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAAEST: gi|110711779|gb|EE088644.1|EE088644
genomic: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCTgtaagttctt ... tgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
EST: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCT GATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAAEST: gi|110712755|gb|EE088078.1|EE088078
genomic: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCTgtaagttctt ... tgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
EST: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCT GATCATTTATTTTCTGAAAACGATGCCTTTTTCGCATGGACATTTGTCAAAEST: gi|161713701|gb|FC062841.1|FC062841
genomic: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCTgtaagttctt ... tgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
EST: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCT GATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAAEST: gi|110711813|gb|EE088718.1|EE088718
genomic: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCTgtaagttctt ... tgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
EST: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCT GATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAAEST: gi|33406482|gb|CF212109.1|CF212109
genomic: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCTgtaagttctt ... tgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
EST: CTGGAAAGAAAAGACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCT GATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
genomic: CTGGAAAGAAAAAACTGTCTACTTGGCCAGCACATTTAGAGATCTTCCCTgtaagttctt ... tgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAA
atccaggtcaagttattgataccatattactttgcttgctgactctgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAACGGAGGCCATTGTGGCAGACACTTCTCTCATTTTTCTGGCCTGTGTTGA
tgctgac putative branch site (score: 2)
ctctgtttt CT-rich tract
atattacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattgttcaatttctcttggaaatcatgcttctgtaaccatttatccaggtcaagttattgataccatattactttgcttgctgactctgttttacagGATCATTTATTTTCTGAAAATGATGCCTTTTTCGCATGGACATTTGTCAAACGGAGGCCATTGTGGCAGACACTTCTCTCATTTTTCTGGCCTGTGTTGA
tgcattg
- - - - - - - -ctcttgg
- - - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - - - -gtaacca
- - - - - - - - - - - - - - - - - - - - - - - -ccaggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatacc