1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCAACCTGATATTGGTTTATGGAATATAGCTCAGTTCACATCAACCCTAATGTCTGCTGAGTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAGgtatttgtgacttgtcaacttttatttctgacttaaaagtttgattagttggtttttttaataaacctttcttcctgacagaaaagtctcaatagttggtttttaattaatggttttatgcccttgtcttattacag
species | Vitis vinifera |
transcript | Vv06s0004g01360.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGTCTGCTGAGTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAG ATATGGAACCAAATTTATGGATGAGTATCAAGCTATAATGACCAGAAAACTEST: gi|110369077|gb|EC933222.1|EC933222
genomic: ATGTCTGCTGAGTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAGgtatttgtga ... cttattacagATATGGAACCAAATTTATGGATGAGTATCAAGCTATAATGACCAGAAAACT
EST: ATGTCTGCTGAGTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAG ATATGGAACCAAATTTATGGATGAGTATCAAGCTATAATGACCAGAAAACTEST: gi|110390115|gb|EC955006.1|EC955006
genomic: ATGTCTGCTGAGTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAGgtatttgtga ... cttattacagATATGGAACCAAATTTATGGATGAGTATCAAGCTATAATGACCAGAAAACT
EST: GTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAG ATATGGAACCAAATTTATGGATGAGTATCAAGCTATAATGACCAGAAAACT
genomic: GTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAGgtatttgtga ... cttattacagATATGGAACCAAATTTATGGATGAGTATCAAGCTATAATGACCAGAAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAACCTGATATTGGTTTATGGAATATAGCTCAGTTCACATCAACCCTAATGTCTGCTGAGTTGATAAATGATAAGGAGGCAAACTATGCCATGGAAAGgtatttgtgacttgtcaacttttatttctgacttaaaagtttgattagttggtttttttaataaacctttcttcctgacagaaaagtctcaatagttggtttttaattaatggttttatgcccttgtcttattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA