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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTGTATATTTATGCTCATTGATTGGAGCATTTCTCAGTGATTCCTACTGGGGTCGATACTTGACTTGTGCCATCTTTCAAGTCATCTTAGTGCTGgtaatatatatgatcatcaccatttctttttcaacaatgatctgaattgttttgagtaatactattgatatgtgtgggaataatttttgcatggtgattag

Basic information

species Vitis vinifera
transcript Vv06s0004g01300.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01300.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G39150.1 (Glycine max), 5'ss of exon 1
TGGAACTGTATATTTATGCTCATTGATTGGAGCATTTCTCAGTGATTCCTACTGGGGTCGATACTTGACTTGTGCCATCTTTCAAGTCATCTTAGTGCTGgtaa--tatatatgatcatcaccatttctttttcaacaatgatctgaattgttttgagtaatactattgatatgtgtgggaataatttttgcatggtgattag
 |||||||| ||| | | ||||||||| ||||||||||| |||||||| ||||||||||||||||| || ||  |  |||||||  |  | || || ||||||   | ||  | | ||| |   ||| | ||     | |  ||||  || || | |  | | | |||| |   | |   |                      
AGGAACTGTTTATATGTTCTCATTGATCGGAGCATTTCTGAGTGATTCATACTGGGGTCGATACTTAACCTGCACAGTCTTTCAGCTTGTTTTCGTTCTGgtatactttactttaccattagtctttttattgttcaacttctctgcctt-ttctaacaagttcaattgtttaat-taatag---------------------

upper sequence: Vv06s0004g01300.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G44320.1 (Glycine max), 5'ss of exon 4
TGGAACTGTATATTTATGCTCATTGATTGGAGCATTTCTCAGTGATTCCTACTGGGGTCGATACTTGACTTGTGCCATCTTTCAAGTCATCTTAGTGCTGgtaatatatatgatcatcaccatttctttttcaacaatgatctgaattgttttgagtaatactattgatatgtgtgggaataatttttgcatggtgattag
 |||||||| ||| | |  |||||||| ||||||||||| |||||||| ||||||||||||||||| || ||  |  |||||||| |  | || || |||||| |  |  | | ||  |  | | |||||  |   ||  |   | || | |    |     |  ||| | || ||     |||| ||  || |       
AGGAACTGTTTATATGTTTTCATTGATCGGAGCATTTCTGAGTGATTCATACTGGGGTCGATACTTAACCTGCACGGTCTTTCAACTTGTTTTCGTTCTGgtacttcactttaccaatattagt-cttttgtattgattgttcaacttttctccctt----ttcctgaca-gt-tgaattgaattgtttaatag-------