Sequence
atgc intronic sequence ATGC exonic sequence...tgattgaaaagttgataattattgtgatcattctcctttcatatagaggaaatcatatcttgaatgtctgaaatatatgttttaaaatgaacctctgcagACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G44120.1 (Glycine max), 3'ss of exon 2
tgattgaaaagttgataattattgtgatcattctcctttcatatagaggaaatcatatc-ttgaatgtctgaaatatatgttt-----taaaatgaacctctgcagACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAG-----
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------tattcttgcacatatttttttccagtagttggaagtttggaaccgagcatactactaggcaagacaaatttccgttggtccatgaaatttaattctgcagACAAACTCAAATTTGATCGAGGGTCGCTGGCAGCTAATTTTCACCACAAGACCTGGAACTGCATCGCCCATTCAGTTTCT
upper sequence: Vv06s0004g01220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G38820.2 (Glycine max), 3'ss of exon 2
tgattgaaaagtt-gataattattgtgatcattctcctttcatatagaggaaatcatatcttgaatgtctgaaatatatgttttaaaatgaacctctgcagACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAG
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-aactaatgaattagatatttattcttagacatatttttccactagttgtaacccagcatactattaggcacgacatattatttgttactacgttctgcagACAAAATCAAACTTGATCGAGGGTCGCTGGCAGCTAATTTTCACCACAAGACCAGGAACTGCATCGCCCATTCAG
upper sequence: Vv06s0004g01220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G51110.1 (Arabidopsis thaliana), 3'ss of exon 2
tgattgaaaagttgataattattgtga-tcattctcctttcatatagaggaa----atcatatcttgaa---tgtctgaaatatatgttttaaaatgaacctc---------tgcagACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAG
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-gtatgaaatgtt-----ttcttgtgaatccttttatcttcaaattaccaaattctgttatgttttgttctttgactcatttggttgtcttttggggaatgttgtttaaatgtttagACAGATTCTGACCTAATCGAAGGTCGTTGGCGATTGATGTTCACCACAAGACCTGGAACTGCATCTCCAATCCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaggaaatcatatcttgaatgtctgaaatatatgttttaaaatgaacctctgcagACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAG
cctctgc CT-rich tract
tgaaatatatgtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgattgaaaagttgataattattgtgatcattctcctttcatatagaggaaatcatatcttgaatgtctgaaatatatgttttaaaatgaacctctgcagACAAGCTCTAGTTTAATTGAAGGTCGATGGCAGTTAATGTTCACAACAAGACCCGGAACTGCATCCCCAATTCAG
- -ttgaaaa
- - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - -aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatga