1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagctcatgcttgtacaaatgaagatgaaacattatttttctctacaccttccaacatgggtttattgactggggtgatgaacttaaattatgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGG
species | Vitis vinifera |
transcript | Vv06s0004g01160.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|110395134|gb|EC960711.1|EC960711
genomic: CATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: TGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|352764252|gb|FQ471232.1|FQ471232
genomic: TGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|110701034|gb|EE078209.1|EE078209
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAATTTGTACTCATCATGCCCATGGTGGACGAAGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|110725828|gb|EE102739.1|EE102739
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|110687523|gb|EE065027.1|EE065027
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|110425091|gb|EC991468.1|EC991468
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|22012114|gb|BQ797148.1|BQ797148
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCAEST: gi|352776754|gb|FQ472641.1|FQ472641
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
EST: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCG GTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
genomic: CCTATGATGCCGTAGTTTGTACTCATCATGCCCATGGTGGACGAGGAGCGgtcagtaacc ... atgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCA
caccttccaacatgggtttattgactggggtgatgaacttaaattatgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGG
tattgac putative branch site (score: 2)
atgaacttaaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctcatgcttgtacaaatgaagatgaaacattatttttctctacaccttccaacatgggtttattgactggggtgatgaacttaaattatgatctcagGTGGACCTAGGTATTGCAGTTCAAAGAGCCTGTGAGACTGTGGCACAGCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -ctcatgc
- - - - - - - - aaatgaa
- - - - - - - - - - - - - gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - acatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacttaaa