1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatggcttgacgaaacaggatttatatagccaacgttgagtaggtggattgtaaaaatatcttttctcatccatttgtaacttatttaggaatttcacagGGCTTCAGGTCAGTCTACTTCTGTTGAGATTGATGGTGAGGATGCTCGGCAATTCATTGCTGGACTTGCTGATAATCTTGGGCTTGAAAACACTCGTGCA
species | Vitis vinifera |
transcript | Vv05s0124g00550.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTCCTTCTATCGTACATCCGTTGAGTTTGTTATAAACATTTGCAGCAG GGCTTCAGGTCAGTCTACTTCTGTTGAGATTGATGGTGAGGATGCTCGGCA
genomic: GATTCCTTCTATCGTACATCCGTTGAGTTTGTTATAAACATTTGCAGCAGgtatgcattt ... aatttcacagGGCTTCAGGTCAGTCTACTTCTGTTGAGATTGATGGTGAGGATGCTCGGCA
ggattgtaaaaatatcttttctcatccatttgtaacttatttaggaatttcacagGGCTTCAGGTCAGTCTACTTCTGTTGAGATTGATGGTGAGGATGCTCGGCAATTCATTGCTGGACTTGCTGATAATCTTGGGCTTGAAAACACTCGTGCA
ttgtaac putative branch site (score: 2)
taaaaatatcttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggcttgacgaaacaggatttatatagccaacgttgagtaggtggattgtaaaaatatcttttctcatccatttgtaacttatttaggaatttcacagGGCTTCAGGTCAGTCTACTTCTGTTGAGATTGATGGTGAGGATGCTCGGCAATTCATTGCTGGACTTGCTGATAATCTTGGGCTTGAAAACACTCGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- tggcttg
- - - - - -gaaacag
- - - - - - - - - - - - - -agccaac
- - - - - - - - - - - - - - - - - - - -gtaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata