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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcttccctgtgttatggttgacccacagaattttgtttaatatttgcattctgatttttccttttcatttttttacttgattaatatagGAGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCA

Basic information

species Vitis vinifera
transcript Vv05s0124g00140.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0124g00140.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G39210.1 (Glycine max), 3'ss of exon 2
gtaggcttccctgtgttatggttgacccacagaattttgtttaatatttgcattctgattttt-ccttttcatttttttacttgattaatatagGAGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCA
           | |   |    |  | |||   |  |    | |  |   || ||| |  | | ||  || ||||  | | |  | |||   |||| | | |  || || ||||| ||  | || || || |||||||||| |||||||||||||||||| || || || || || ||| ||||||||||||||
----------gtataccacctctc-ctcacctcacctcacctcacct---cactctcacctctgcccctttatttaatcaatccactaacgcagGACTACCTCCGAAGAAGATGAAGTCTATTCAGTTGCACGATTATTAGCTGATCTTGTTGCTTATCGCGCCTCCGGAACCGGCCATATGGAACTCTTGGCA

upper sequence: Vv05s0124g00140.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G05790.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggcttccctgtgttatggttga--cccacagaattttgtttaatatttgcattctgatttttccttttca---tttt----tttacttgattaatatagGAGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCA
   |  ||     ||  ||  || |  | ||       | |||    |  |  ||    | ||| |   ||||   | ||    |||  |||  |  |  ||| |||   | ||||| || || ||    || || ||  || | ||||||||||||||| | ||||||||||| ||||| || ||||||||| | ||||||
--tgatttaatactgaaatcatttatactcatttgtcctggttctggagatttatagcaactttactagttcagactcttagaatttgattgtctgcttcagGGGTGTTATTGAGGAAGACGAAGTGTGTTCAGTTGCAAGACTCTTAGGTGATCTTGTTTCATATCGTGCATCTGGCACTGGCCATTTGGAATTTTTGGCA

upper sequence: Vv05s0124g00140.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 3
-----gtaggcttccctgtgttatggttg-----------acccacagaattttgtttaatatttgcattctgatttttccttttcattttttt---acttgat----taatatagGAGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCA
      |  | || ||||  |||    ||           || ||       | |||    |  |  ||    | ||| |   ||||   | ||   | |||||    |  |  ||| |||   | ||||| || || ||    || || ||  || | ||||||||||||||| | ||||||||||| ||||| || ||||||||| | ||||||
gcaagttttgttttcctgatttaatactgaaatcatttatactcatttgtcctggttctggagatttatagcaactttactagttcagactcttagaatttgattgtctgcttcagGGGTGTTATTGAGGAAGACGAAGTGTGTTCAGTTGCAAGACTCTTAGGTGATCTTGTTTCATATCGTGCATCTGGCACTGGCCATTTGGAATTTTTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaatatttgcattctgatttttccttttcatttttttacttgattaatatagGAGTGCATTGGAGGAGGATGAGGTTCACTCGGTGGCCCGATTATTAGGTGATCTTGTTGCTTATCGTGCATCAGGCACGGGACATTTGGAACTCTTGGCA
                                            gattaat  putative branch site (score: 3)
                    tttttccttttcattt  CT-rich tract
                   atttttccttttcatt  TA-rich tract