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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt...

Basic information

species Vitis vinifera
transcript Vv05s0102g00710.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g66940.1 (Oryza sativa), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt
 |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || |  |  |  ||||||||| ||||||||||       ||| |   |    |  |||   | | |  |  |    |   |||| | |||          ||| ||    |       |  ||       || | |   
CCTCCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCCGACATGCTCCTCACCCACGCCGAGCTCAACGTCGAGCTCATCAAGAGGgtaagccccccgctgatctccttatcccccctccgtgttcttctcatctccgcgatctgcggaggaggcagttccgttccacccgatcccgtcgcgcgcg

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G026969_T01 (Zea mays), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt------
 || ||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || |   | || ||||||||| ||| |||||| ||    ||| ||     |  |  ||  | |||     ||||  || |  |   ||||| |  ||   | | | |  |     |    |   ||      |||  |       
CCTGCGCGCCGACGGCGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCCGACATGCTCCTCACTGCCGACGAGCTCAACGTCGGGCTCATCCGGAGGgtaagtcaagccgcc--ctggcccttgcttggcga--tccccgtgccttcccgt--gatccgcggacagccatactgtaactgattgaccccgtctagtggcagca

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G086845_T02 (Zea mays), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttt-tccctttagaattgagaagattctcggagatcttcc-atggatttctctcttt
 || ||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| || |   | || ||||||||| ||||||||||       ||| |||    |  |  |   |    |  | |  | |  ||  |  |  |||         ||     |  | | | ||||| |  |  |  || |  ||  
CCTGCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAACCCCAGCGCTGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAGCTCATCAAGAGGgtaagttaagcca-cgccacgccacgccacggtaacccatccttggtgatcctcgcccccgtgccttcacgccccgcgatctgcggacagccttattgctg-

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G03430.1 (Glycine max), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactc-----ttctgct-----gcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt
 || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||| || || |||||||| || |||||  |||| ||| |  |||| | | |||  |||      ||| ||     |  || | | |  | ||| ||   | ||   ||    |  |  | |||  |||||| ||          
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACCGGAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAACCTTGAACTCATCAGATCTgtatgcatcttttccctctctctcgctctctctactttctcggaaaatatttaaccttttcccggaaaacgaagtctttgtttcgtgat--tccatgtatga--------

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G13580.1 (Glycine max), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttcca-tggatttctctcttt
 || ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| || | ||| || || ||||| ||||| |||||  |||| |||||    |   | |||| | |  ||  ||   |  |||     |||| | |    | |      | ||| ||    | |   | ||||||   ||    
CCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCACGCCCGAAGATCTCAATCTCGAACTCATCAGATCTgtacgcaaatctattttctcaattctcaactttcagttcttgtcgtttttcttcgttagtgtttgtgtttcacgcgcgtgtggtaatggattatgctgag-

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G41960.2 (Glycine max), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt
 || ||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||| || ||||| || || ||||| ||||| |||||  |||| ||| |  |||| | | |||      | |   |  || | | |  | ||| || | | ||   ||    |  ||   |          ||| | |    | 
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCAAGCCCGAAGAACTCAATCTCGAACTCATCAGATCTgtatgcatcttttccctctcttaactttctcggaaaatttttaaccttttccctgaaaacgaagtctttgttccatgtatgagttgagatgtgtgatctg

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA12G05580.1 (Glycine max), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatg---gatttctctcttt
 || ||||||||||| ||||||||||||||||||||| | ||||| || ||||||||||| || | ||| || || ||||| ||||| |||||  |||||||| |   |   |   ||| | |  ||  ||   |  |||    |||||  |||      | ||    |  | |    ||   | ||    | |  |    ||
CCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACAGAAACCCCAGTGCCGACATGCTCCTCACGCCCGAAGATCTCAATCTCGAACTCATCAGATCCgtaag---caaatctatctcaattctcaactttcagttcttctccttttttcttcctttcttagttagtgtttgtgtttcacgcgtgtggaaatgatgggctt

upper sequence: Vv05s0102g00710.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G59480.1 (Arabidopsis thaliana), 5'ss of exon 1
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgc--------tgcgaactctctctcttttccct--ttagaattgagaagattctcggagatcttccatggatttctctcttt-------------------------------------------------------------------
 ||  |  | || ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||    || || |||||||| || ||  ||||  |||| |||||||  || |  || | | |  | |           || || ||| | |    ||| |   |   ||| |         ||| | |    |||  |  |  |  ||                                                                    
ACTAAGATCTGATGGAGAACGTGAGTTCATGTTCTACCGGAACCCTAGTGCCGATATGCTCCTCCGTCCCGACGAGCTCAATCTTGATGTCATCAGATCTgtacgttatttttatttttaattaatatatgacacgtaggcaaattcttttttgggtccgtgtctcacatttaattagcgaacggtgctacatcattaacgtaacggttgttggtatacgtaacgtagatgtcaagttaggttaatgagtgctctgttttgtttttgttttacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110703624|gb|EE080635.1|EE080635
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|77588021|gb|DV223223.1|DV223223
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|351023456|gb|FQ432839.1|FQ432839
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110356697|gb|EC919713.1|EC919713
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71876870|gb|DT025925.1|DT025925
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71866387|gb|DT015442.1|DT015442
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71874401|gb|DT023456.1|DT023456
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71876436|gb|DT025491.1|DT025491
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161713213|gb|FC063657.1|FC063657
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|77587592|gb|DV222965.1|DV222965
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71870552|gb|DT019607.1|DT019607
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110690353|gb|EE067376.1|EE067376
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110686222|gb|EE063626.1|EE063626
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110685620|gb|EE062498.1|EE062498
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|77584887|gb|DV221526.1|DV221526
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|37186510|gb|CF605863.1|CF605863
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|351047713|gb|FQ455110.1|FQ455110
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161721362|gb|FC071052.1|FC071052
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110703976|gb|EE081385.1|EE081385
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|37186258|gb|CF605611.1|CF605611
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161713084|gb|FC062165.1|FC062165
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|30254536|gb|CB971281.1|CB971281
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCGCTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161717708|gb|FC064712.1|FC064712
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|294965397|gb|GW837112.1|GW837112
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTAACGGATCCATAAGCTTGATAGTGGAGCCATGCAG
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTA-CGGATCCATAAGCTTGATAGTGGAGCCATGCAG
EST: gi|161710251|gb|FC058961.1|FC058961
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAG
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAG
EST: gi|110689964|gb|EE066650.1|EE066650
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|77582820|gb|DV220390.1|DV220390
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71865686|gb|DT014741.1|DT014741
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161718355|gb|FC065014.1|FC065014
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161713550|gb|FC063139.1|FC063139
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110389806|gb|EC954675.1|EC954675
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161717471|gb|FC066874.1|FC066874
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161719713|gb|FC066084.1|FC066084
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110685221|gb|EE063392.1|EE063392
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71873832|gb|DT022887.1|DT022887
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161707230|gb|FC057325.1|FC057325
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|352794196|gb|FQ479438.1|FQ479438
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71872645|gb|DT021700.1|DT021700
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71856460|gb|DT005515.1|DT005515
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110357056|gb|EC920333.1|EC920333
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110685533|gb|EE062334.1|EE062334
EST:     CCGA--TGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|77580018|gb|DV218892.1|DV218892
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|37186302|gb|CF605655.1|CF605655
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110689774|gb|EE066292.1|EE066292
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110690379|gb|EE067429.1|EE067429
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110686183|gb|EE063565.1|EE063565
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161705925|gb|FC055381.1|FC055381
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110390818|gb|EC955748.1|EC955748
EST:     CTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161719527|gb|FC067407.1|FC067407
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110703461|gb|EE080325.1|EE080325
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTATGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110702373|gb|EE081009.1|EE081009
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110687522|gb|EE065026.1|EE065026
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|27578649|gb|CB001344.1|CB001344
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71871083|gb|DT020138.1|DT020138
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71870893|gb|DT019948.1|DT019948
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71867734|gb|DT016789.1|DT016789
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|27585009|gb|CB007704.1|CB007704
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|77580338|gb|DV219057.1|DV219057
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|71871176|gb|DT020231.1|DT020231
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110358991|gb|EC919737.1|EC919737
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161713088|gb|FC062464.1|FC062464
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|110688347|gb|EE066795.1|EE066795
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|161721521|gb|FC069737.1|FC069737
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|351018993|gb|FQ426492.1|FQ426492
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGCCATGCAGA
EST: gi|37187362|gb|CF606715.1|CF606715
EST:     CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCC                         GCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGC
genomic: CCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttct ... tggaaaatagGCAAAGGTGTTCCACTACGGATCCATAAGCTTGATAGTGGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCCGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTGCTGAAGCCGGAGGAGCTCAACCTCGAGCTCATTCGATCCgtacgtttcttcttcttcttactcttctgctgcgaactctctctcttttccctttagaattgagaagattctcggagatcttccatggatttctctcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctc