Sequence
atgc intronic sequence ATGC exonic sequenceACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtactgctgatcacctatgagtcatgtagtttctatgtgataagattaaggctcagatgagactcttcatgtcttttcttcacacaaccttttgaaattctaatgccattttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0102g00100.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G348666_T02 (Zea mays), 5'ss of exon 16
ACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtactgctgatcacctatgagtcatgtagttt-ctatgtgataagattaaggctcagatgagactcttcatgtcttttcttcacacaaccttttgaaattctaatgccattttag
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ACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTGTCAAGTAATTCTGAGGAGAGCATCCACTTTTGCAAGTTCCCTTCCACAACTGGCGAGgtaat--tgttcatctaaattctaaacattccattgtgtcttattttagcagattggcttatgacttaaatgttttgttagaataggaacccat--acccctaa-----------
upper sequence: Vv05s0102g00100.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G158627_T03 (Zea mays), 5'ss of exon 3
ACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtactgctgatcacctatgagt--catgtagtttctatgtgataagattaaggctcagatgagactcttcatgtcttttcttcacacaaccttttgaaattctaatgccattttag
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ACCATTCTTTACTGAAGTTCTTTATCAAAATTTGCGGAAGGTATCAAGTAAATCTGAGGAGAGCATTCACTTCTGCAAGTTCCCTTCCACAACTGGTGAGgtaat--tgttcatctaaacattccattttgtgttattttagcagaat--ggcttctgacttaaatagttaaatgttcgattgat----tttgttacattgccag-----------
upper sequence: Vv05s0102g00100.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA11G09990.1 (Glycine max), 5'ss of exon 16
ACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtac-tgctgatcaccta-tgagtcatgtagtttctatg--tgataagattaag-gctcagatgagactcttcatgtcttttcttcacacaaccttttgaaattctaatgccattttag
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ACCTTTCTTCACTGAGGTGCTCTATCAAAATATGCGAAAAGTTTCTAATGGATCAGAGGAAAGCATACACTATTGCAGTTTTCCTACAGAAGAAGGAAGGgtatatcttaattattcaatatattctctcagtcctgtaattgatactataaaatgattaaaaaacaaaaacattgtagtttcttgtgcttattgtttgg-------------------
upper sequence: Vv05s0102g00100.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G02330.1 (Glycine max), 5'ss of exon 16
ACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtac---tgctgatcac-ctatgagtcatgtagtttctatg--tgataagattaaggctcagatgagactcttcatgtcttttcttcacacaaccttttgaaattctaatgccattttag
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ACCTTTCTTCACTGAGGTGCTCTATCAAAATATGCGAAAAGTTTCTAATGGATCAGAGGAAAGCATACACTATTGCAGTTTTCCTACAGAAGAAGGAAGGgtatacatcttaattattcaatatattctctcaatcctgcaattggtactattaaatgattgaaaaaaaaaacaatgtagtctcttgtta-ggcct----aaact---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861509|gb|DT010564.1|DT010564EST: GATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAG AGAGGAGAACGAATTGAACAAAGTGTTGCAAGGATGACAACAATAATTGAT
genomic: GATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtactgctga ... gccattttagAGAGGAGAACGAATTGAACAAAGTGTTGCAAGGATGACAACTATAATTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCGTTCTTCACTGAAGTTCTTTATCAAAATTTACGGAAAGTTTCCAATGGATCAGAGGAAAGCATTCACTATTGCAGTTTCCCTCAAGAAGAGGGACAGgtactgctgatcacctatgagtcatgtagtttctatgtgataagattaaggctcagatgagactcttcatgtcttttcttcacacaaccttttgaaattctaatgccattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG