1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcttactttgtactgaagttggaaagtgattcgttgagtttaaagatatgaaaaattcaattcattcactaatgtacacctgcttgaatctggcttcagGCAATCTGTGAAGGACCTCTGGTTTGAACGTTACTTGTTATAAAACAAACTGGACTTCATCAAGATTGCAAGATGGGTCTGGTTCAACCTTTAATGGATA
species | Vitis vinifera |
transcript | Vv05s0094g00510.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCGCCCGAGCGGCCGCCACTTACGCCACTGCTG GCAATCTGTGAAGGACCTCTGGTTTGAACGTTACTTGTTATAAAACAAACT
genomic: CTCTCGCCCGAGCGGCCGCCACTTACGCCACTGCTGgtacacacct ... ctggcttcagGCAATCTGTGAAGGACCTCTGGTTTGAACGTTACTTGTTATAAAACAAACT
gatatgaaaaattcaattcattcactaatgtacacctgcttgaatctggcttcagGCAATCTGTGAAGGACCTCTGGTTTGAACGTTACTTGTTATAAAACAAACTGGACTTCATCAAGATTGCAAGATGGGTCTGGTTCAACCTTTAATGGATA
cactaat putative branch site (score: 2)
aaaaattcaattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttactttgtactgaagttggaaagtgattcgttgagtttaaagatatgaaaaattcaattcattcactaatgtacacctgcttgaatctggcttcagGCAATCTGTGAAGGACCTCTGGTTTGAACGTTACTTGTTATAAAACAAACTGGACTTCATCAAGATTGCAAGATGGGTCTGGTTCAACCTTTAATGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - -aaagtga
- - - - - - - - - - - - - - - - - - - - - aaagata
- - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgctt