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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAATATGTTTCTTGGATAATCCATCCACAGATACACAGgtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtag

Basic information

species Vitis vinifera
transcript Vv05s0077g00480.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G377641_T01 (Zea mays), 5'ss of exon 8
GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAATATGTTTCTTGGATAATCCATCCACAGATACACAGgtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtag
||||||||| |||||||||||||||||||| | |   ||||| || || || || |||||||| ||||||||  | || |||   || ||||| ||||| || |   || ||  |  |||||   || |  | | |   |     |||  | | | | | ||       | ||                
GGCATGGGCTATGCTTGCCACTTCACTGGGACGTAACAGTTTCATCAAGTCGGACTTTGAAAAGATATGTTTTCTTGACAATATTTCAACAGACACACAAgtgagttttgttgcggtatcaa---tgagtttccagtctcctttgttttggtagcttatattaatatgttcag----------------

upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G26510.1 (Glycine max), 5'ss of exon 1
GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAATATGTTTCTTGGATAATCCATCCACAGATACACAGgtaaag-atttttctgccatcaacattgtggatgctgaaccgca---aatttctgaaacatgttttgtctcactgag--------tcataaaatgttgtag-------------------------------------------
||| ||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||| |||||||||| ||||||||      || |     | |||| |   |   | ||  |         |||| |  ||    || |||  || | |         |  | | || |||                                              
GGCTTGGGCAATGCTGGCCACTTCACTGGGCCAACCTAGTTTCATTAAGTCTGAATTTGAAAAAATATGTTTCTTAGATAATGCATCCACAGACACACAGgtgttttgttatatcctcttcaataagttcacttctctattttttatgattttttcaattgtttatgtaacattcaaaaatctatttgtgatatattgccaatatcttattccatggactggtttctattttctaagccattag

upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G20890.1 (Glycine max), 5'ss of exon 7
GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAATATGTTTCTTGGATAATCCATCCACAGATACACAGgtaaagatttttctgc-catcaacattgtggatgctgaaccgca---aatttctgaaacatgttttgtctcactgag--------tcataaaatgttgtag----------------------------------------------------
||| ||||| ||| | ||||||||||||||||| |||||||| ||||| ||||| ||||||||| |||||||||| |||||| |||||||||| ||||||||      || | | | | |||| |       | ||  |         |||| |  ||    || |||  || | |         |  | | || ||||                                                      
GGCTTGGGCAATGTTGGCCACTTCACTGGGCCAACCTAGTTTCATTAAGTCTGAATTTGAAAAATTATGTTTCTTAGATAATGCATCCACAGACACACAGgtgttttcttatatcctcttcaataagtccacttctctattttttatgattttttcaattgtttatgtagcattcaaaaatccatttgtgatatattgtcaatgtcttattctatggactggtttctattttctaagttattagaactttcag

upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G00920.1 (Glycine max), 5'ss of exon 4
GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAAT-ATGTTTCTTGGATAATCCATCCAC-AGATACACAGgtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgtt---ttgtct-cactgagtcataaaatgttgtag-----------------------------------------------------------------
  | ||||| ||| | |||||||||||||| || |||||||| ||||| ||||| ||||||||||| ||| ||||  |||||| | ||||| ||| ||||||||      ||||||   |||  | |     |  |     | | | ||| |   |  | ||   |||| |     |  |   |||||    | |                                                                 
--CTTGGGCAATGTTGGCCACTTCACTGGGACAACCTAGTTTCATTAAGTCTGAATTTGAAAAAATTATGGTTCTAAGATAATGCTTCCACCAGACACACAGgtg-----ttttcttatatcctcttcaaaaagtccacttctctattttttatgattttttcaattgtttatgtagcattcaaaaatccatttgtgatatattgtcaatgtcttattctatggactggtttctattttctaagttattagaactttcag

upper sequence: Vv05s0077g00480.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT4G13550.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCATGGGCGATGCTTGCCACTTCACTGGGCCATCCTAGTTTGATTAAATCTGAGTTTGAAAAAATATGTTTCTTGGATAATCCATCCACAGATACACAGgtaaagatttttctgccatcaacattgtggatgctgaaccgcaaatttctgaaacatgttttgtctcactgagtcataaaatgttgtag
||||||||| |||||||| ||| | ||||| ||||| || || || |||||||||||||||||  |||| ||  | || ||      ||| || |||||||| ||   | || || | || |||   |        ||   ||| ||  ||| | ||  |  |    ||| | |   ||  ||  |   
GGCATGGGCAATGCTTGCAACTGCTCTGGGGCATCCAAGCTTTATCAAATCTGAGTTTGAAAAGCTATGCTTTCTAGAAAACGACATCACTGACACACAGgtgaa---tcttttgtcttcgacaa-attttcctgaaaatacaagttcatgatagatagt--gatatactaatttgcaagctgcag---